Perca flavescens (yellow perch): 114567861
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Entry
114567861 CDS
T07494
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114567861 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114567861 (snrnp40)
Spliceosome [BR:
pflv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114567861 (snrnp40)
Complex C
U5 SnRNP specific factors
114567861 (snrnp40)
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_IFT140_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
114567861
NCBI-ProteinID:
XP_028452838
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Position
14:19191314..19199237
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AA seq
347 aa
AA seq
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MIEPKKRVADMAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNYATMKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAATFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgattgagcctaagaagagagtggcggacatggcggtggttcctaccgcagtgaagcgt
ccccggacggagctggtggcggcggctcagtctcagcaactcgtggccatgggtccccca
cggagctccagcctgcaggctcccattatgctgatgtctggccacgagggcgaggtctat
tgctgcaagtttcaccccaacggagccacactggcttcctcaggatttgacaggctcatt
ttgatgtggaatgtgtatggagattgtgacaattatgccactatgaagggccatagcgga
gcagtgatggagctgcactacaacacagatggcagcatgctgttttcggcgagcacagac
aagactgtaggtgtgtgggacagtgaaacaggcgagaggatcaaacgtctgaagggccac
acctccttcgttaacacctgctacccggcccgccgagggccccaactcgtctgcaccggc
agtgatgacgggacagtcaagctgtgggacattcgtaagaaaggggcgatccacactttc
cagaacacctaccaggtgctggctgcgacattcaatgacaccagtgatcagatcctgtca
ggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaacaaactgatctacaat
atgcacggccatggggactcagtaactggactcagcctgagttctgagggatcatacctt
ctctcaaactccatggacaacacagtgcgtatttgggatgttcgaccatttgcaccaaag
gagagatgtgtgaagattttccagggcaacgttcacaactttgaaaagaatttgctgagg
tgctcctggtctactgacggcagtaagatagctgccggctcagctgacagatttgtgtat
atctgggacaccacatcacgtagaatcctgtacaagctgccgggccacgccggctcagtc
aacgaagtggcatttcatccagaggagcctatagtgctgtctggctccagtgataaaagg
ctctacatgggagaaattcagtag
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