Perca flavescens (yellow perch): 114568136
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Entry
114568136 CDS
T07494
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114568136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114568136
03036 Chromosome and associated proteins [BR:
pflv03036
]
114568136
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114568136
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114568136
mRNA degradation factors
5'-3' decay
Decapping complex
114568136
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114568136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
114568136
NCBI-ProteinID:
XP_028453344
LinkDB
All DBs
Position
14:10868394..10879898
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENIGPVVMGLNKQNGQLRGQTKPASVQPAPTTQGKTLGAPQIAGGAAQDGGGIK
FGDDWKKSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHASGADCDVEEIEE
KPGRKQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaacattggcccagttgtcatgggactgaacaagcagaat
gggcagctcagaggacagactaaaccagcgtcggtccagccagcccccacaactcaagga
aagactttgggtgcaccccagatagcaggcggtgccgctcaggatggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctccctcccaaagacaccagggtcaaaact
tcagatgtgacgtccaccaaggggaatgaatttgaagattactgtctcaagagagagctc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaagaatggaacagggaaaagt
ggagcctatctcattccactgctggagagaatagacctgaaaaaggaccacatacaggca
cttgtcatggtgcccacccgtgagctggcactgcaggtaagccagatctccatccagatc
agcaaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtctggatgagactgtgcatgtggtcatcgccacgcctggtaggatcctg
gacttgataaaaaagggagtggcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttcccaatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctatgagataaacctgatggaggagctgactctgaag
ggcattactcaatactatgcctacgtcacagagaggcaaaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcgattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcttgcttctacatccatgctaaa
atgatgcaggaatacagaaacagagtgttccatgacttcagaaatggactatgcagaaac
ctggtctgcactgatctcttcaccaggggtattgacatccaggctgttaacgtagtcatc
aacttcgacttccccaaaaatgctgagacttacctccatcgtattggaagatcagggagg
ttcggtcaccttggcttggccatcaacctgatcacatcggaggaccgcttcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccacgcgtccggcgccgactgtgatgtggaggagattgaggag
aaaccaggacgcaaacaggacagcacctaa
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