Perca flavescens (yellow perch): 114568426
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Entry
114568426 CDS
T07494
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114568426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114568426
03009 Ribosome biogenesis [BR:
pflv03009
]
114568426
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114568426
Spliceosome [BR:
pflv03041
]
Complex A
U2 snRNP components
U2 related factors
114568426
Complex B
114568426
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114568426
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
90S particles
Helicases
114568426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
114568426
NCBI-ProteinID:
XP_028453851
LinkDB
All DBs
Position
2:26055637..26064197
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AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDLKPPSVPSNST
VPVTMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSTAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcctggatttgggtgatgattactcgtccactaagaagaggtct
gaagggagagacagggaccgggacagagaccgtgaggaccgctccagggacagggaccga
gatagggaccgggaccgggacagagacctgaagccgcctagtgtcccgtctaacagcacg
gtgcccgtgaccatgccgtgcttggcgcccatcaagcagatggctatgcaacagcagatc
aacccgttcaccaacctgccgcacacgccgcgcttctacgagatcctgaagaagcggtta
cagcttccagtgtgggagtacaaggaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggtgaaactggctctgggaagacaacacagatcccacagtggtgtgtg
gatatggtgaggggcttgcctgggcctaagcgggcggtagcctgtactcagcccaggaga
gtggcagctatgagcgtggctcaaagagtggcagacgaaatggacgtcatgcttgggcag
gaagttggctactccattcgatttgaggactgcagcactgctaagactatactcaagtac
atgacggatggtatgttactaagagaggctatgaatgacccgctgctggagcgatatggt
gtgatcattctggacgaagctcatgagcgaactctggccacagatatcctgatgggtgta
ctcaaggaggtggtgcgtcaaagaccggatctgaaggttatcgtcatgagtgccacgcta
gatgctgggaagtttcaggtgtacttcgacaactgtcctctcttgactattcctggacgt
acgcaccctgtcgagattttctacacccccgaaccagagcgggactaccttgaggcagcg
atccgcactgtcatccaaattcacatgtgtgaggaagatgaaggtgactgccttctcttt
ctcactggtcaagaggaaattgatgaggcctgcaagcggatcaagcgcgaggtagatgac
cttggacctgaagtcggagacatcaaaatcatcccactgtattctacgttgccgccacag
caacagcaaaggatctttgagccgcctcctccaagaaagccaaatggtgcaataggaaga
aaggttgtggtttcgacaaacatcgctgagacctctctgacaattgatggagtggtgttt
gtcatcgatcctggatttgccaagcaaaaggtttacaatccccgtatcagagttgagtct
ttgctcgtcacggccatcagtaaagcttctgcccagcagagggcgggacgagccggcaga
acacgtccagggaaatgtttccgcctttacacagagaaggcctacaaaacagagatgcag
gataacacataccctgagattctgcgatccaacttgggatctgttgtgctgcagctgaag
aagctgggtattgacgaccttgtgcactttgacttcatggatccaccagctcctgagaca
ctgatgagggcccttgagctgctgaattacctggcagctctcaatgatgacggtgacctg
acggagctgggctccatgatggcagagtttcctttggacccccagcttgctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctttccattactgccatgctgtca
gtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtccaagatg
aggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggctaaccagtggtgctatgataactttgtcaactaccgttcactgatg
tctgccgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctgccccgt
cggagcacggagttcaccagcagagattactacaccaacatccgccgagcactctgcacc
ggcttcttcatgcaggtggctcatttggagcgtacaggccattacctcacagtcaaagac
aaccaagtggtccaactgcacccatctacagtcctggaccacaagcctgagtgggtgctc
tacaatgaatttgtcctcaccaccaaaaactacatccgcacgtgcacggacatcaaacca
gagtggctggtgaagattgcaccccagtactacgaaatgggtaacttcccacaatgtgaa
gctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcccaatac
tga
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