Perca flavescens (yellow perch): 114568899
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Entry
114568899 CDS
T07494
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114568899 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114568899 (xab2)
03041 Spliceosome [BR:
pflv03041
]
114568899 (xab2)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114568899 (xab2)
Spliceosome [BR:
pflv03041
]
Complex B
Other components
Prp19-related factors
114568899 (xab2)
Complex C
114568899 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
NRDE-2
TPR_1
Tcf25
N_NLPC_P60
SNAP
Motif
Other DBs
NCBI-GeneID:
114568899
NCBI-ProteinID:
XP_028454353
LinkDB
All DBs
Position
15:15012774..15021032
Genome browser
AA seq
846 aa
AA seq
DB search
MPSLNGKPDVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLSAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVEAEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQMMKATTSSTVSDLAPGQMEIDDMKMLEQKAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELSKQANPDEIDIDDEDEDDENQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaatggaaaacctgatgttctgtttgaggacgatgatctgccttatgaa
gaggagattatcaggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagccaaatccaccctcaacatgatatatgagcgggctctgaaagagctgcct
ggcagctacaagctgtggtacaattatctgagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaggctatgaagagatcaataattgccatgaaagggcattggtgttc
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgctctcagagctcttcctgttactcaacac
ccacgcatctggcctctgtatctccgctttgtgcgtaacctgcccctgcctgagactgcc
atccgggtgtaccgcaggtaccttaagctttctccagaaaatacagaggaatacatagac
tacttacggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgtcaat
gatgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctatgc
gacctgatctcccagaaccctgataaagtgacctctctaaatgtaggagccatcatccga
ggaggcctcactagattcacagaccaacttggaaaactctggtgctctttagctgattat
tatatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttacg
gtggtaacagtaagggatttcacacaagtatttgatagttacgcccagtttgaagagagc
atgattgcagcaaagatggagaccactgctgagatgggaaaggatgaagatgaggacata
gacatggagcttagactggcccgttttgagcagctgatagcccggcggccccttcttttg
aacagtgttctactgcggcagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctgtatgagggcaatccgcggcagataatcaacacatacactgaggcagtgcagactgtg
gatccgatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaagtgaac
tacaagcaggtagatgacctttctgcggtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgtatactgaggaaagctacagccatcccatccaag
aaagcggagtactttgatgcatccgagccagtccagaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaagagagtctcggcactttcaagtctacaaaagca
gtgtatgatcgcatcattgacctccgcatcgccacgccacagatcatcatcaattatgcc
atgttccttgaggagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatt
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgagcaagccctagat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggcagtagaagct
gaggagagacatcaaatgttcaatatctacatcaagagagcagctgaaatttacggagtc
acgtataccagagcaatttaccagaaagctatcgaggtccttcctgatgagcatgcacgg
gacatgtgtctgcgatttgctgacatggagagtaaacttggtgagattgatcgggccaga
gcaatttactcttactgctcccaaatctgtgacccaagggtgactgcaaacttctggcag
acatggaaagaatttgagatccgccatggaaatgaggacacgatcagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgtctgctcagatg
atgaaggctacaacaagctccacagtgtcagatcttgctccaggccaaatggaaattgat
gacatgaagatgctggagcagaaagcacagcagcttgctgcagaggccgagcaggacaaa
cccaaactcaaagaaaagattctctttgtcaggagtgatacctctcgcagtgagttggct
gagctttccaaacaagccaatcctgatgagattgatattgatgatgaggatgaagatgat
gaaaaccagggaccagaagaggtgcagcttgaacagaagagtgtccccacagctgtcttt
ggagggcttaaagaggactga
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