Perca flavescens (yellow perch): 114570179
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Entry
114570179 CDS
T07494
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114570179 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114570179 (patl1)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114570179 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
114570179 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
114570179
NCBI-ProteinID:
XP_028456239
LinkDB
All DBs
Position
2:complement(39619934..39673346)
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AA seq
828 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGLIQEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAQLDERDGL
GLGLGGEMGGESNSRGVEDSSSTHLPSSTGHLPQPSSIPSLKFSSSSSGPPPSDVEDRGG
EGDLAESLARLILEADPAIAGVGAAERPGPSPSSSGSSLSALQGLDLPRVLPSILHPNQP
HQHPHHLQHQLPPGPSTSGLPPGPSPSSLLSYQQQQHLLRRGTAPMAQMNSHSIWENSMG
FGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPQSRNDEGRDLSERVPPPRSSSPVIGSP
PVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERVSPNTLLNIANSPL
CRGPFPPGVGPVLSQIQRAQLLNSQVAGFPHGGPAPPLLPGGGFRPFFGGPPPPLGHRMG
PPPLHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTGLDRRSRDPYSNLMTQK
EKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKRFVQVPEEDREALLEQHKTNTLQLCNSLREKEWDDRVSDEQCVMIMSVR
KGKRLISRLLPFLPSPQAAAIVMAISRNLPALAKKDKQDQVLCWLVEPISAVIQSLSSSA
LTDLLQELQGNEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSV
TRELLSVPTSSLSSPLFTPPNLLSLFSRYVDRQRLELLQDKLQISSLS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgaagactgtacgctggaggaggaagatgagggactg
atacaggaggaagatgaaattgatcagttcaacgatgacactttcggagctggggccatc
gatgacgactggcaggaggaacacaaacgcctcgctcagctcgatgaaagggacgggtta
ggactggggttaggaggggagatgggaggagaatcaaattccagaggagttgaggactca
tcctccacccatcttccttcctctacgggccatctcccccaaccatcttccatcccttca
ctcaaattctcctcgtcttcctctggaccccctccatcagatgtggaggatcgaggaggg
gaaggcgacttggcggagtccctggccagactcatcctggaagctgacccggccattgct
ggggtcggggcagctgagagacctggtccatcccccagctcttcaggatccagtctgtct
gctctgcagggcctagacctacccagagtcctgccctccattctgcatcccaatcaacca
caccagcatccccatcacctgcagcaccagctgcctcctgggccctctacctcaggcctt
cctcctggcccttctccctcgtctttgctcagctaccaacagcagcaacacttgctgcgc
agagggactgctcctatggcccagatgaactctcacagtatctgggagaacagtatgggg
tttgggccagtcagtgtcacccccggactggttacacacatggaggatagtccactaatg
tctataatcaaggaggtgggccttcctaaacgacctcctcaaagtaggaatgatgaagga
cgtgatttgtcagaaagggtcccacctccacgctcttcttcccctgtgattggctcccca
ccggtgagggcagtgcctattgggaccccgcccaaacagcctatgagccatgccctgaat
catcagatccaccaccccacggcggttcatgtgagagccccagtccaacacagataccct
cctccttttcctgagcgtgtgtcacccaacaccctactcaatatagctaactctccgctg
tgtcgcggtccgttccctcctggagttggtcctgtcctgtcacagattcaacgggctcag
ctgctcaactctcaggtggctggttttcctcatggtggtccagcgcctcctttgttacca
ggtggtggttttaggccgttcttcgggggccctcctcctccacttggtcatagaatgggt
ccgccaccccttcatggcccccccaaccacacgccacctatccgacacaacaccacacac
cttcacccccagcaccgacgcatgctcacccaacgcatgcagaaccggggaggggaccgt
ggcaggactggattggaccggcgcagcagggacccctacagtaatcttatgactcaaaaa
gagaaggaatgggtaaccaagatccagatgatgcagctgcaaagtactgacccttacctg
gatgactactactatcagaactactacgaaaagatggagaaacgtcaggaaagagagaga
gacagcagcaagaaggaacacaccaccaaactgatcactccacaggtggccaaggttgaa
cacacctacagaccagttcagtttgcaggctctctcggtaagctgacggtctccagcgtc
aacaaccctcgcaagatgattgatgctgtggtgacaacccgcacagatgatgaggaaaaa
agagagaagcaggtttggaataagaggcgacagatcctctacactgtggagaagatgtac
agtttgctgctagaggttcaagactttgagaaacgttttgtccaggtgccagaggaggac
agggaggctcttctagagcagcataaaaccaacaccttgcagctgtgcaactctctgcgg
gagaaggagtgggacgacagagtgagtgatgagcagtgtgtgatgatcatgtcagtgagg
aagggcaagcggctcatctccaggctcctccctttcctgccctcaccccaagctgccgcc
attgtcatggcgatttctcgcaaccttcctgccttggccaagaaggacaagcaggaccag
gtgctgtgctggttagtggagccgatttctgctgtgatccagtcattatccagctctgcc
cttacagacttgctccaggagcttcagggcaatgagggccaactggccacagtattgcac
aacaagtttggtgtgacactgctgtatctgatcctgagtgaaggagagaggatgcaaagt
tccgaccctaactgtcaactcatggatgacaatcgatggacggagttggtgttttcagtg
acgagggagttgctcagcgtgccgacctcatcgctctcttctcccctcttcacccctccc
aacctgctctcactcttctcacgctacgttgatcggcagaggctggagctgttacaggac
aagctacagatctcttctttgtcctga
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