KEGG   Perca flavescens (yellow perch): 114570314
Entry
114570314         CDS       T07494                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
pflv  Perca flavescens (yellow perch)
Pathway
pflv03013  Nucleocytoplasmic transport
pflv03015  mRNA surveillance pathway
pflv03040  Spliceosome
pflv05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pflv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114570314 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    114570314 (alyref)
   03015 mRNA surveillance pathway
    114570314 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    114570314 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pflv03019]
    114570314 (alyref)
   03041 Spliceosome [BR:pflv03041]
    114570314 (alyref)
Messenger RNA biogenesis [BR:pflv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     114570314 (alyref)
    TREX complex
     114570314 (alyref)
Spliceosome [BR:pflv03041]
 Complex C
  Other components
   EJC/TREX
    114570314 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    114570314 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 114570314
NCBI-ProteinID: XP_028456378
LinkDB
Position
15:7955519..7958652
AA seq 270 aa
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGSGGGRGGGGPGRLGVSGGGFAGRGGGS
GPMRSRQNLSRGRGRPTPYSRPKQLPDKWQHDMFDNGFSGPVGGGGGAGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGIPLD
GRPMNIQLVTSQIDTQRRPMQGLNRGGGGGMNRNRGGGFRGMQRGRGGRGAGGAGGRGRG
GRGGSGSKQQLSAEELDAQLDAYNARMDTS
NT seq 813 nt   +upstreamnt  +downstreamnt
atggccgataaaatggatatgtctctagacgacattatcaagcagaacaggcagcagaga
ggtggaggccgcggtggaagaggtcgaggccgcggaggctcaggtggcggccgaggagga
ggaggccctgggcgtcttggagtcagcggcggcggatttgcaggccgaggcggcgggtcc
ggccccatgaggagccgacagaatctgagccgcggtagaggcagaccaacgccttacagc
aggcctaaacagcttccagataagtggcagcatgacatgtttgacaacggcttcagtggc
ccagtcggaggtggcggaggagctggtgtggaaactggagggaagctcctcgtctccaat
ctcgactttggggtctcagatgctgacattcaggaactttttgctgaatttgggactctg
aaaaaggctgcagttcactatgaccgatcggggcggagcctgggaaccgcagatgtccac
tttgaaagaagggcagatgcccttaaggccatgaaacaatacaatggcatcccactggat
gggcggcctatgaacatacagctcgtcacatcacagattgacacacagaggcgacctatg
cagggtctgaacagaggcggtggaggaggcatgaacagaaatcgcgggggtggcttcaga
ggcatgcagagaggccgcggaggacgtggtgcaggcggtgccgggggaagaggtcggggt
ggccgcggcggtagtggtagcaagcagcagctgtcagcagaagaactcgacgcccagtta
gacgcctacaatgccaggatggacaccagctaa

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