Perca flavescens (yellow perch): 114570483
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Entry
114570483 CDS
T07494
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114570483 (ythdc2)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114570483 (ythdc2)
Spliceosome [BR:
pflv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114570483 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
R3H
HA2_C
Helicase_C
OB_NTP_bind
DEAD
HA2_N
Ank_2
AAA_19
ATPase
nSTAND3
Ank
Ank_5
Ank_4
PhoH
AAA_22
AAA_7
AAA_25
AAA_30
SRP54
T2SSE
Motif
Other DBs
NCBI-GeneID:
114570483
NCBI-ProteinID:
XP_028456576
LinkDB
All DBs
Position
16:complement(1979935..2056363)
Genome browser
AA seq
1417 aa
AA seq
DB search
MSNAGTASQKPARNTPPRGSKSRGLKEIHIDEEVKIAVNLSLERFRYSDQKEMEFPSSLS
STERAFIHRMAQSLGYISKSKGKGPNRSLTIRKKNGSEKPRPTMPLTLSHNSLYFIRSLL
QRFPISNKERIDMQPSNKSGMSMASEPDSSCDRTRASGRLNNGIPMVPRRRSPSELDSFR
RSLPVHERQKEIIQLIRENKVVLVMGETGSGKTTQIPQFLLDECSRNGEPCRIFCTQPRR
LAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMAGDASLTTV
THVIVDEVHERDGLTDFLLTKMREVLQKIPTLKLILSSAALDIDLFLQYFGSCPVIHLKG
RQFEVRELFLEDVLRLTGFNNKDLRKYKEETQRKEKKQKRLMEWCEAVENGSVEETQRTE
VSALGFLQDSSYLDGGDHTFNKPPDNDAEQLEPWLQKEMDSCISNVFLNEDQDAFIQLFN
LILYENVNVDYRHSDTGTSPLMAAAGRGFLTQMEQLLNMGADINLKASNGWTALDFAKHF
QQIDAMDLLKSSIPLGEVSSLGESTLVQCGNAEMSTPEEQELLKLYHHSFDDEWVDLDLI
MDLLHNICSTTSDGAVLIFLPGYDDIVALRGRILYDDKRFSNHSDRYQVFTLHSDMQTLD
QKKAMKTSPPGIRKIILSTNIAETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWIS
KASALQRKGRAGRCRPGICFHLFSRLRFSNMLEFQVPQLLRMPLQELCLQTKLLAPSSCP
VAEFLSKAPQPPAAHAIRNAVQMLKTIDAMDQNEDLTDLGYHLADLPVEPHLGKMVLCAV
VLKCLDPILTIACTLAYRDPFILPAQGSQKRAALHCRTRFTSNSFSDHMALLRAFQAWQK
ARSDGWERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWA
VVKAALVAGMYPNLVHVNQETSLLSSNREKKVHFHPTSVLSQSQLKENSPAKSAQALPTD
WLIYDEMSRGHRMASVRCCSLTTPVTVAIFGGCAKLPSSALQEPAVQRATDSLVDVSDSE
TEDLAEMKIDDWLLFQLDKEAAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLVS
VLAAEEQGAGLQQPTGIGQRPRPMTSEDGPQASGKNSRHNPQSPTNTTNDKSCRMPATSS
LLQMKAQSREESSLPTNQLSDDLHSSSNSSCSVTLDSPYESPSPSSSGKVQLLCDLTCEL
PHKQISKPMSPELVFSSVRYFIMKSSNVRNIEISQQKGIWSTTPSNETKLTKAFLENNLI
ILIFSVQGSGHFQGYARMTSIISQESCQDWGFMGLGGVFSVEWIHKDSVPFQCTQHIVNP
WNDNKKVQISRDGQELEPQAGSQLLLLWERNSGNQVQ
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgctggtacggcatcacagaaacctgccaggaacacaccgccccgtggatcc
aagtccagaggcctcaaagaaatccacatagatgaagaagtcaagatagctgtgaacctc
tccctggagaggtttcgctacagtgaccagaaagagatggagtttccctcctccctgtcc
agcactgagagggctttcattcatcgaatggcacagtccctgggttacatttcgaagagc
aaagggaaaggaccaaatcgctccctcaccatcaggaagaagaacggttcagagaaacct
cggcccaccatgcccctcacgctgtcccacaattccttgtatttcatccgcagcctactt
cagaggtttcccatcagcaacaaggaacgcatcgacatgcagcccagcaacaaaagtggc
atgtctatggcttcagaacccgacagcagttgtgacaggaccagggcaagcggtcgcctt
aacaacggcatacccatggtgcctcggaggaggagtccatcggagctggacagttttcga
cgatccctgcctgtgcatgagcgccagaaggagatcattcagctcatcagagaaaacaaa
gtggtgttggtgatgggagaaaccggctctggaaaaacgacacagatcccacagttcctg
ctggatgagtgcagcaggaatggagagccctgcaggatcttctgcactcagcccagacgc
ctggctgccatcgctgtggctgagagagtggcagctgagagaggggagagtgttggccag
actgttggttatcacatcagactagagagcagggtctcccccaagacgctgctgaccttt
tgcaccagtggagtgttcctcaggacgttgatggccggagacgccagcctgacaactgtc
acacatgtcattgtggacgaggtgcatgagcgtgacggtctgactgacttcctgctcaca
aagatgcgggaggtgcttcagaagatccccacattaaaactgatcctctccagtgcagcg
ctggatatagacctgttccttcagtactttggctcctgccctgttatccacctcaaagga
agacagtttgaagtgagggaactctttctggaggacgttctgaggctgacgggctttaac
aacaaggacttgaggaaatacaaggaagagacacagagaaaggagaagaagcagaaacgt
ttgatggagtggtgtgaggcggtggagaacggttctgttgaggagacacagaggacagag
gtgtctgccctaggcttcctccaggacagcagctacctggatggaggggaccacaccttt
aacaagccgcctgacaatgatgcagaacagctggagccgtggctgcagaaggagatggac
tcttgtatttccaacgttttcctcaatgaagaccaggatgctttcattcaactcttcaac
ctaatcctctatgaaaatgttaacgtggactacaggcacagtgacacagggacttctcct
ctgatggcggcagcaggtcgagggttcctcacacagatggagcagctgctcaacatgggg
gcagacatcaacttgaaggcatccaatggctggacagccttggactttgccaaacacttc
cagcagatagatgccatggatcttctcaaatcttccattcctttgggggaggtgagcagc
ctgggtgagtccactctggtgcagtgtggcaatgctgagatgagcacccccgaagagcag
gagctgctcaaactgtaccaccacagctttgatgatgagtgggtggacctggacctcatc
atggatctgctgcacaacatctgctccaccaccagtgatggtgctgtactgatttttctt
cctggatacgatgacatagtggcactcaggggtcgcatcctgtatgacgataagagattc
tccaaccactctgacaggtaccaggtgttcactctacattcagacatgcagactctggat
cagaagaaagccatgaagacctctccccctggtatcaggaagataattctttctactaac
attgctgagacgagcatcaccatcaacgacgtgatctttgtcattgattcaggaaaggtc
aaagagaagtcctttgacaccctcagtcatgtgtccatgttaaagacggtttggatctca
aaagccagcgctctgcaaaggaagggaagagctgggcgctgcagaccagggatttgcttc
cacctcttcagtcgtctcaggttcagcaacatgctggagttccaggttccacagctgctg
cggatgccactgcaggaactgtgtctgcagaccaaactgctggccccctcctcctgtcca
gtagcggagttcttgtccaaagctccacagcctcctgctgcacatgccatcaggaacgct
gtgcagatgctaaagacaatagatgctatggaccaaaatgaagacctgactgatctgggc
taccacctggcagatctgcctgtggagccccacttgggcaagatggtgctgtgcgctgtg
gtgctcaagtgtctggaccccattctaaccattgcctgtactctggcctatcgggacccc
ttcatccttcccgcccagggatctcagaaaagagctgctctacactgccgcacacgtttc
acttccaacagcttcagcgaccacatggccctgctgagagccttccaggcgtggcagaag
gcccgcagtgacggctgggagagatccttctgtgagaagaacttcctgtctcaggccacc
atggacatgatacttggcatgaggacacagctgctgggacagctccgtgccattggtttc
gtgcgagctcgtgggggcagtgacatccgcgatgtgaacctgaactctgagaactgggcc
gtggtgaaggccgcgctggtggccggcatgtatccgaacctggtccatgtgaaccaggag
acctccctgctctctagtaacagggagaagaaggtccacttccatcccacatctgtcctg
agccagtcccagttaaaggagaacagcccagccaaatcggcccaggcccttcccacagat
tggctgatctacgatgagatgagccgaggccacaggatggccagtgttcgctgttgctcc
ttgacgactcccgtcactgtggccatatttggagggtgtgccaaactacccagctctgcc
ctgcaggaacctgctgtacagagagctactgacagtctggttgacgtcagtgacagtgag
acagaggacctagccgaaatgaagattgatgactggctcctcttccaattggacaaagag
gctgcaggactggtgtttgaactgaggcagaagtggcagaatttgttcatcaagaggatc
cgttgtccttcaaagccctggtctcaacaagacgaggccattatccggactctggtgtct
gtgcttgcagcagaggagcagggagccggcctgcagcagcccacagggattggtcagcgg
ccccggcccatgacatcagaggacgggccccaggcttctgggaagaactccaggcacaac
ccccagtcccccaccaacaccaccaatgacaagtcttgtaggatgccagcaacctcaagc
ctgctacagatgaaagcccaaagcagagaagagtcctcactacccacaaatcagctctct
gatgacctgcactcctccagtaattcttcctgctctgtgaccttggacagtccctatgag
agcccctcgccttcctcctcaggaaaggtacaattattgtgtgatctcacgtgtgagctg
ccgcacaagcagatctcaaagccaatgtctcctgagctggtcttttcatcagtgcggtac
ttcatcatgaagagcagcaatgtcaggaacattgagatttctcagcagaaagggatctgg
tccactacaccgagcaacgagaccaaactcaccaaggccttcctggagaataacctcatc
atcctcatcttctctgttcagggctccggacacttccagggctatgctcgcatgacatca
atcatcagtcaggagagctgccaggactggggcttcatgggactaggaggggttttcagt
gtagagtggatccacaaggacagtgttcccttccagtgcacccaacacatcgtcaaccca
tggaacgacaacaagaaggtccagatcagcagggacggacaggagttggagccccaagca
ggcagccagctgttgttactgtgggagagaaactcagggaatcaagttcaataa
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integrated database retrieval system
