Perca flavescens (yellow perch): 114570760
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Entry
114570760 CDS
T07494
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114570760
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114570760
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114570760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
114570760
NCBI-ProteinID:
XP_028457089
LinkDB
All DBs
Position
16:8458972..8602783
Genome browser
AA seq
1847 aa
AA seq
DB search
MFCCWLKLTLCLLGLITTSAASPDVAPVDFGGESGSGMLQTDEVNILQELSLQMSNSSNA
SLTVDDSRCPVLQVGQYSTLALSLQHLLTDGFADEFSLLVQLRSPQRDERSVFTILSPDS
HVMVQLRISAHAIIFIGTQQRHYEFPVSGLSDGKWHHLAVSVSAKRLALYVDCSLLESVD
WVYHGMGIGGNGLLMVGGIIEGFETPFEGHLRQLSFLMGDPEAAQQHCSRHPPRCGESAP
KSPRSPRTNNARELGSDMSPRCLRGSQMPFEAHSPDIQTPAVNTFDSRTCYILRSMIKII
GGFKNILLSSNDLEDLLGNLKDESLLSFVRTNLFLRRGSSRGDGTVPSGSNRKGSVGRGD
VFVVDEDTDLLDPTFHIGGQVNPQWKPSRNVLKGSQKGKPELPSKQEENITTDKKADSGG
RTTPLSPGKPFGDIIDLDVGGAPKKPSVGFPVPKIPSDPRTSTDSGTSAKAVVEEGRPIT
NGKQPDNAIVTIVSKEENLVLGSDGKMYRLQRGPMGRMGPSGQEGCPGEAGPPGFKGDKG
KLGPEGRSGKTGEPGAPGPPGLPTLYLWKNTAEEWAAFQQTNFYQLLHAGWPSKEGPPGP
PGEMGKPGIQGPPGYAGERGRPGMPGEMGERGLRGPPGRAGAPGRDGENGEDGQPGSPGD
PGTPGLWGYRGERGSEGEKGDEGLIGLKGPRGEIGEPGEKGSTGLLGPPGPVGPPGPQGN
RGGQGPEGPHGPDGERGLDGPPGLPGPTGAAGITGIVGAQGVNGSRGDMGPAGSVGPKGP
QGPPGLEGQMGPPGLRGPQGHPGLIGAPGPKGDPGPVGPMGARGDPGFEGPTGAAGRPGP
IGFPGLTGNRGPDGDKGDPGPKGNKGILGAAGIRGPQGERGPTGSPGFAGTEGRPGPKGT
EGTNGETGPQGKQGSGGLKGNRGPDGRNGKPGPRGNKGRPGQRGHTGQPGPSGLPGPPGP
EGAEGKPGTQGPSGAAGSTGSRGPMGFQGIPGERGADGPPGSPGPPGKPGPPGSPGPPGD
KGFTGKPGMEGPQGPVGMYGVQGNVGMRGPPGFTGERGEPGLRGLPGPVGKPGPAGLPGP
SGDKGPRGPQGRPGDEGSKGIQGPPGPPGLPGGDGAAGKPGPRGSLGSPGTQGPQGPAGI
PGPQGAAGMLGAAGERGDKGLPGLLGDAGPTGQDGQQGLPGQTGNEGPPGQKGDQGDQGS
CGKLGPPGSPGERGHEGPKGLQGPPGQVGGEGDVGHPGEPGDPGSEGEKGEVGPPGLSGR
EGPWGDLGENGERGPKGEKGHNGLMGEPGLMGEVGHAGLAGLQGITGSRGLPGPDGPQGQ
KGESGSVGITGPPGSGGPRGITGSRGVRGDAGGLGPPGPVGKVGPQGDQGAKGEAGPQGL
KGETGAPGPPGEQGEDGLPGIKGPPALPGFEGPPGEMGPQGPPGPPGAPGVKGRAGPEGN
QGMSGEKGDDGENGSPGKLGHVGKRGKRGKAGVRGTRGDRGPKGQKGDSGLVGLPGWPGL
IGIAGLRGEPGDQGRKGKEGEKGDMGLPGPPGADGMKGIRGPVGLPGPLGLKGEQGNIGL
PGPRGTPGMPGLPGLFGLKGLKGYQGFPGLPGRRGLPGPPGLPGPPGQSLNMTLTQLKDL
MYMSDKPNYHVVQTVLDSLQQELRLLLDPPDGSKEHPATTCLELWLCHPEYSSGTYYIDP
NQGSPADALLAYCSFSSTSKQTCLHPRHSQLPMKAWMEEFFEEGSFQWLSKLEQGFQFYY
PGANVVQMRFLRLHSSTAVQNMTHSCQPGHRLGQADRDVKFLTDSRKQSYLGALKDCVPG
EEIISGPRESVFEFEDLHLLPLRDVAPMGGGNFTHQFGFTVGPVCFS
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgttctgctgctggttaaaattgacactttgccttctcgggctcatcacgacgagcgct
gcctcacctgacgttgcaccggtggattttggaggagagtccggctccgggatgctgcag
acagatgaggtgaacattctgcaggagctttctcttcagatgtcaaacagcagtaacgcc
tcattgactgtggacgacagcaggtgtccagtcctacaagtgggacagtactccaccttg
gctctctctcttcaacatctcctcactgacgggtttgccgatgagttcagtttactggtg
cagctgcgaagtcctcagagagatgaacgcagtgtcttcaccatactcagccccgacagc
cacgttatggtgcagctgcgtatcagtgctcatgccatcatcttcataggaacacagcag
cgacactacgagttcccagtcagcggtctgtctgacggaaagtggcaccatctggccgtc
agtgtgtctgccaagcggctggcgctgtatgtggactgctctctgctggagagtgtggac
tgggtgtaccacggcatggggatcggcggcaatgggctgctcatggttggaggcatcatc
gagggctttgagactccatttgaaggtcatctccgacagctgagcttcctgatgggcgac
ccagaagcagcccagcaacactgtagccgccacccgccccgctgtggtgagagcgccccc
aagtctcctcgctccccacgcaccaacaacgccagggagctcggctctgacatgtcaccg
aggtgtttgaggggaagtcagatgccctttgaagcccacagcccagacattcagactcct
gcagttaatacttttgacagcagaacctgttatatactacgaagcatgataaagatcatc
ggaggatttaaaaatatactgctgtcctcaaatgacctggaggacctgctggggaatctc
aaggacgagtcattgttgagttttgtcagaactaatctgtttctgcggcgagggagttct
cgaggggacgggacggtgccttcaggatccaatcggaaaggttcagtaggtcgtggggat
gtctttgtagtggacgaggacacagacttgttggatccgaccttccacattggtggacaa
gtcaaccctcagtggaaaccttccagaaatgtacttaagggaagccaaaaaggaaagcct
gaactgccctctaaacaggaggagaacattaccacagacaagaaggctgactccggtggg
aggacgacaccgctttcccccggaaaaccattcggtgacatcattgacctggatgtcgga
ggtgcccccaaaaagccctcagtgggatttcctgtacctaagatcccatcagatcccaga
acgtccacagactctgggacatctgcaaaggcggtagtcgaggaggggagacccatcacc
aatggtaaacaaccagacaatgccattgttaccattgtatccaaagaagaaaacctggtc
ctgggctcagatggcaaaatgtaccggctccagagaggaccaatgggccgaatgggtccc
tcagggcaagaaggctgtcctggtgaggctggcccgcctgggtttaaaggtgataagggt
aaacttggccctgaagggcgttcaggaaaaacaggggagccaggagctcctggaccgccg
ggtttaccaaccctctacctgtggaagaacacagcagaggaatgggctgcctttcagcaa
accaatttctaccagttacttcatgctggttggcctagtaaagaaggccctccaggacca
cctggagagatgggcaagcccggcatacagggaccacctggttacgctggggagcgagga
cgaccagggatgccaggagagatgggcgagcggggtctccggggccctccaggacgagcc
ggggccccagggagagacggggaaaatggagaagatggtcagcccgggtcacctggtgat
cctggaacgccgggcctgtggggatacagaggagaacgagggtccgaaggggaaaaaggt
gatgagggtctcataggcctcaagggaccaagaggagaaattggtgaacctggtgagaag
ggctctactggtttactgggcccacctggtcctgtcggaccaccggggccacaggggaac
cgagggggccaagggccagaggggccccatgggcctgatggggagaggggactggacggc
cctccaggtctgccaggaccgacgggtgcagcaggtatcacaggaatagttggcgctcaa
ggagttaatggctcaaggggagacatgggacctgctggcagtgttggtcccaaaggccca
caggggcctccaggtttagagggacagatgggacctccaggactcagaggaccccaagga
catccaggactgatcggtgctcctggacctaaaggagatcctgggcctgtggggcccatg
ggtgcccgaggggatcccggctttgaggggcccacgggtgctgcagggagaccaggtcct
attggttttcccgggctaacgggtaacaggggaccagatggggacaagggggatccagga
cctaaaggcaacaaaggtattctgggggcggcaggtattaggggtcctcagggagagagg
ggccccaccggctccccaggttttgcaggcaccgagggccggcctggccccaaaggcacg
gagggcactaatggagaaactggtcctcagggaaaacagggcagcggtgggttaaaggga
aacaggggaccagatggacgtaacggcaaaccaggacccagagggaacaagggccggcct
ggacagaggggccacactggccaaccgggtccatcgggtttgcccgggccacctggacca
gagggagcagaaggaaagcctggtacacagggcccctcaggtgcagctggcagcactggc
agtagagggccaatgggttttcaaggaattcctggagagagaggagcagatggcccacca
ggttcaccggggccaccggggaaaccaggacctccaggatcaccaggacccccaggggac
aagggtttcacagggaagccaggcatggagggacctcagggcccagtaggcatgtatggt
gtccaggggaacgtgggcatgcgtgggcctcccgggtttacaggagaaaggggtgagcca
ggtttacgaggtttacctgggcctgttgggaagccaggacctgcaggactgccaggtcct
tctggagacaagggaccccggggacctcagggtcgtcctggagatgaaggatccaaaggg
atacagggcccacctggccctccaggtctcccaggtggagatggagcagctggaaaacct
ggacctaggggaagcctagggtccccaggaactcaggggccacaagggccagcaggaatc
ccaggcccacagggtgctgctgggatgttaggagcagcaggggaaagaggagacaagggt
ttacctggcttgcttggtgatgctggccccaccggacaagacggacaacagggtctccct
ggccaaacaggaaatgaaggcccacctggacagaaaggagaccagggggaccaagggtct
tgtgggaaacttggtcctccagggtctccaggagagagaggacatgagggcccaaaaggc
ttacagggaccacctggacaagtgggaggagagggtgatgtcgggcatcctggggaacct
ggagatcctggatccgaaggggagaagggtgaggtggggcctccaggtttgtctggtcga
gaaggcccttggggagacctgggagaaaacggcgaaaggggcccaaagggggagaagggc
cacaatgggctaatgggtgaaccggggctgatgggtgaggtgggacatgcaggtctggcg
ggattacagggaatcacaggctctcggggactcccggggccagatggacctcagggccag
aagggggagtctggctctgtgggaattaccggccctccggggtcaggaggccctcgggga
ataactggctctcgtggtgtcagaggagacgcaggggggctgggaccacctggtccagta
ggaaaagttggacctcagggagaccagggagctaaaggggaagcggggccacagggacta
aagggagagacaggagctccaggtccaccaggggaacagggtgaggatggtctgccagga
atcaaaggtcctccggctctgccagggtttgagggacctccaggagagatgggcccccag
ggtcccccaggtcctccaggggctcctggagtaaaaggaagagcaggacctgaggggaac
cagggcatgtctggggagaagggagacgatggcgagaatggatcaccagggaagctgggt
catgttggaaagagggggaaacgggggaaggccggagtcagagggaccaggggagacaga
ggacccaagggccaaaagggagactcagggctggtcggcctccctgggtggccagggctc
atcggaatcgcaggcttacgtggagagccaggggatcaaggtagaaaggggaaagagggg
gagaagggagacatgggactgcctggaccacctggagctgatggcatgaagggtattcgg
ggtcctgttgggttgcctggtccactgggcttgaagggagagcagggaaatattggttta
ccaggaccgaggggtacaccagggatgccagggctgcctggtttgtttggattaaagggt
ttgaaaggctaccaaggtttccctggtctgcctggcaggagggggctcccgggtccacct
gggcttcctggacccccaggacagtcactaaacatgacgttgactcaactcaaggacctg
atgtatatgtccgataagcccaactaccatgtggtccagactgtgctagattctctgcag
caggagcttcggctgctgctggatcctcctgatggcagcaaggagcaccctgccactacc
tgcctggagctctggctctgtcaccccgaatacagcagcggaacttattacattgacccc
aaccagggcagcccagcggatgctctgctggcctactgcagcttctcttcaacatcaaaa
cagacctgccttcatccccgacactcgcagttgcccatgaaagcctggatggaagaattt
tttgaagaaggatcctttcagtggctcagcaagctggagcaggggtttcagttttactat
ccaggtgctaatgtggtccagatgcgttttctgaggttgcacagtagcactgccgtccag
aatatgacccactcatgccagccaggacacagactgggccaggcagacagagacgtcaaa
ttcctcacggactcaaggaagcaaagttacctcggagcacttaaagactgtgtgcctgga
gaggagatcatttctggacctcgggagtctgtgtttgagttcgaggacctccatctgctc
cccctgagagatgtagcaccaatgggaggtggaaacttcacacaccagtttggcttcacc
gtcggacctgtgtgtttcagctag
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