Perca flavescens (yellow perch): 114570822
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Entry
114570822 CDS
T07494
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114570822 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114570822 (mtrex)
03041 Spliceosome [BR:
pflv03041
]
114570822 (mtrex)
03009 Ribosome biogenesis [BR:
pflv03009
]
114570822 (mtrex)
03016 Transfer RNA biogenesis [BR:
pflv03016
]
114570822 (mtrex)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114570822 (mtrex)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114570822 (mtrex)
Spliceosome [BR:
pflv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114570822 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
114570822 (mtrex)
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
Pre-60S particles
Helicases
114570822 (mtrex)
Transfer RNA biogenesis [BR:
pflv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114570822 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114570822
NCBI-ProteinID:
XP_028457191
LinkDB
All DBs
Position
16:complement(22051973..22078448)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPASLTPDIGKVISKNGTDKDAGPSAAVKREADSDG
GEEMVFGKKPRHETVSANDLNLAEFMPQVKVEQVDTVEGCSHEVALPASDDYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRK
GGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KNYEEQYHNIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFCKKSNVKTSTDSEPLYVVEVLVHCSKDSLKDAATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSILEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPMHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcttttggagacggtttgttcagcgtgtttgacgatgaacaacaaactacc
acaagcaaaaagatacctgcttctctgacaccagacatagggaaagttataagtaaaaat
ggcaccgacaaagatgctggtccatctgcagcggtcaagcgagaggcagacagtgacggt
ggagaggagatggtgtttgggaagaaacctcgacatgagacagtctctgctaatgaccta
aatcttgcagaatttatgccccaagtgaaggtggagcaagttgacactgtggaaggatgc
tcacacgaggtggctcttcctgccagtgatgattataaacccctgaaaccacgagtgggg
aaagcagccaaggagtatccttttgttcttgacccgttccagcgtgaggccatcttatgt
atcgacaacaacgagtctgtgcttgtctctgctcacacctctgctggcaagactgtctgt
gctgaatatgccattgcactggcccttagagagaagcagagagtgatcttcaccagcccc
atcaaagccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtggga
ctgatgactggtgatgtcaccatcaaccccaccgcctcctgccttgtcatgacaacagag
atcctgaggagcatgctttaccgaggctctgagatcatgagggaggtggcgtgggtcgtc
tttgatgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagactatc
attcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccagg
cagtttgccgagtggatttgccatctacataagcagccatgccatgtagtctacacagac
taccgtcccactccgctgcaacactacatcttcccatcagggggcgatggactccaccta
gttgttgatgagaatggagacttcagagaggataatttcaacacagctatgcaggtgctg
agagacgcgggggattctgggggcagtggagggggcaagtgggacccgagaggacggaaa
ggaggcactagaggtccatccagcgtgttcaagatagtgaagatgatcatggagaggaac
ttccagcctgtcataattttcagcttcagcaagaaagaatgtgaggcctacgctctacag
gtagccaaactggactttaacagagatgatgagaaacgtctggtggaggaagttttcaac
aacgcagtggactgtctttcagacgaagacaagaaactccctcaggtggagcatgtgctg
ccgttgttgaagagggggataggaatccatcatggaggcctgctgcccatcctgaaagag
accatagagatccttttctctgaaggtctgatcaaggccctgtttgctacagagacattt
gccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgcaaatttgat
ggcaagaatcaccgctttattacatcaggtgagtacatccagatgtctgggcgagccggt
aggagaggaatggacgacaggggaattgttattttcatggtggacgagaagatgagtccg
gctgtgggcaaacagctactgaagggctcggccgaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatgctg
gagaagtctttctaccagttccaacactacagggctttgcctggtgttgtggagaaaatt
aagaattatgaggagcagtaccacaacattgagattcccaatgaagagggcgtggtcact
tactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagttcacccac
aaacccaaatactgcttgcccttcttgcagcctggacgacttgtcaaggtaaaaaatgaa
gatgctgactttggctggggagttgttgtaaacttttgcaagaagtccaacgtgaagacc
agtacagactctgagccgctctatgtggtggaggttttggtccactgtagtaaggacagt
ctaaaagatgctgcgactgaggctgctaaacctgctgctccaggggagactggagaaatg
caggtggtcccagtgatgctccatctcctgacttccatcagctctgttcgcctttacatc
cccaaagacctgaggccctttgacaacagacagctcatgctcaagtctatactggaggtg
cagaaacgtttcccagatggcgttcctctgctcgaccccatagatgacatgggcatcaaa
gaccctgcactgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcc
caccccatgcacagtgaccccaacttggaatctgtgtattccctctgtgagaagaaagct
ctgatcgcagcagacgtacggacggccaagcgagagctgaagaaagctcggaccgtcctg
cagatggacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagtccg
tctgatgtcatcgagatgaaaggacgggtggcctgtgaaattagcagtgctgacgagctc
ctgctgacggagatggtgttcaacggtctcttcaacgatctgacggccgaacaagccacc
gccctgctgtcctgctttgtcttccaggagaatgccagtgagatgccaaaactgactgaa
caactagcagctcctttgagacaaatgcaggagtgtgcaaagcgcatagccaaggtttct
gcagacgccaagctggaggtggacgaggagacttatctaaaccagttcaagccgcacctg
atggatgtggtatacgcgtgggctaacggcgccacgtttgcccaaatctgcaagatgact
gacgtctttgaagggagcatcatccgctgcatgcgtcgtctggaagaagtcctgagacaa
atgtgttctgcagccaaggccataggcaacactgaactggagaacaagtttgctgaagga
ataacaaagataaagagagacattgtatttgcggccagtctctacctataa
DBGET
integrated database retrieval system
