KEGG   Perca flavescens (yellow perch): 114571011
Entry
114571011         CDS       T07494                                 
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
pflv  Perca flavescens (yellow perch)
Pathway
pflv04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pflv00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    114571011
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pflv00536]
    114571011
Glycosaminoglycan binding proteins [BR:pflv00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   114571011
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 114571011
NCBI-ProteinID: XP_028457557
LinkDB
Position
16:22686690..22764190
AA seq 1766 aa
MNLGTRRRDCRTSHLDTKRALLLCTVLYCTCYLGLTQVHSEDVDIIQKLGLKGEKPSRSV
PAGVIPFRSGIILNQRAHIETPLRSLFPAAIWPNLALVLSVRSHRVNSAFLFTLLSGRKK
LLLGLQLAPGNLVLHTGPNTSVALPYEPHDGQWHQLAVGINGQRVTLYASCGEQSVHADF
GWDSEEGLAPELQGSFLLGRTSQQQASAHFEGAICQFDLVPSAQAAHNYCRYIKKQCREA
DTYRPNLPPLLPILQRETNITATAATPKRGGPETPRKTTGLSLARSVAAAASAVRYVAPT
QTIKPSPGTISTPLLGTVMPVTVQLGMASPPPKARTESVTAPLGTRAPPTKPPNPKPTPS
KASNQKPSKQTPPKPTPHNNSKKTIAGTDKKKKPTIPATTTTKPSKTKPDSALSEQGAVP
KKPQPTTAKKTSPKPKVTPSKATPSKPKTNSVKVVPSKPSIYKVNPSKSTISKTTTAKTS
KPVSKQVIKPTKQTKTTKATVTPQPTRPSYNPVTPPATDGFQSWEVPPTQFSLLAGPIGQ
KGEAGPWGLPGPPGKPGLPGKRGPRGAPGPHGNPGRAGPPGLKGRKGDPGISPGPAPKGE
KGDSGILGPVGLTGQEGRKGQKGYPGPPGLPGEPGEQGPVGSPGAKGYPGRQGLPGPIGP
MGPKGVRGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGFPGDFGERGPPGPDGEPGE
LGAPGPNGVLGLIGDMGPLGEMGLPGPNGLKGVPGNPGEPGLKGDKGDIGIPGEQGEIGY
RGDKGIQGAPGLPGIRGKPGPQGKLGERGPAGAPGPPGPEGFPGDMGPPGENGLEGPKGK
PGARGLPGPRGVPGLEGDEGPIGPPGPTGLEGRMGRKGFPGKVGPEGVKGEPGVTGNVGT
MGERGLVGFIGPVGEAGLAGEKGDRGEMGHPGPPGEKGSTGHPGTPGETGPKGPPGRPGT
PGAIGPAGTRGPKGLRGAIGPDGPTGEMGLEGKTGTDGPPGKIGFPGPQGKIGESGETGP
KGFPGIQGPSGPPGDKGIPGEPGSPGPPGTVGLLGEIGQKGPPGMLGEPGLPGEPGEKGA
IGPVGNIGEQGIIGQRGEPGLEGEAGPAGPDGAKGEKGDMGQEGDNGEKGEIGLKGKEGP
PGSPGLTGVRGPEGKPGKIGEGGKQGPKGAKGHQGHLGETGTVGKTGPPGFVGQKGSRGT
IGHVGAPGRMGQQGELGLAGYEGHQGPQGPIGPPGPKGEKGEQGDDGKVEGPPGPPGDIG
TPGDRGERGESGDPGYKGQVGVDGERGRPGAPGQPGQPGPRGQQGPKGAKGDQGQKGKKG
QLGQKGNRGQEGEGGLPGPRGVVGREGLEGVPGMDGVPGKDGSKGMPGEHGDDGEDGFSG
KAGLRGKSGVPGLPGDQGTIGPKGEQGLRGQSGPPGKRGFRGGMGLPGPQGDQGPKGQPG
DTGEAGFPGIPGVFGPRGPPGDFGPKGIRGPKGPQGAMGRGGVIGPMGIIGPNGSAGPRG
EKGNHGETGLQGPMGSPGPRGPPGLPGRPGIPLSFKEDGLLVMDSHTRLRTQNKPAMDLP
MLDQGAEIFKTLHYLSNLIQSLKNPLGTRDNPARICRDLHSCEQKLNDGTYWMDPNLGCS
SDTIEVSCNFTGGGQTCLKPITVSKPAISVGRVQMNFLHLLSSEAEQHIIIHCLNISVWR
SAEDQPATQDSVRFKAWSGEVFEVGGQLEPEVLEDSCWIKDGRWHQTHFVFHSLDPSLLP
LVDIYNLPKTTPGSHYHLEVGPVCFL
NT seq 5301 nt   +upstreamnt  +downstreamnt
atgaatttaggcacccgaaggagagattgcagaacctctcatctagacacaaagagagcc
ctattgctctgtaccgtattatattgtacttgttacctgggacttacacaagtacactct
gaagatgtggacatcattcaaaagttggggctcaagggagagaaaccgtcacgctcggtg
ccagcaggggtcattccattcagatcggggatcatcctcaaccagcgggcgcacattgaa
actccattgcgctcactcttcccagcggccatctggccgaacctggcactggtcctgagt
gtgcgctcacaccgtgtcaacagtgctttcctcttcaccctgctctcaggccgcaagaag
ctccttcttggtctgcagcttgcaccgggcaatctggtccttcacacgggaccaaacacc
tcagtggcactcccctatgagccccatgatggtcagtggcaccagctggcggtgggaatt
aatggacagagagtgactctatatgcctcctgcggagagcagagtgttcatgcagatttt
gggtgggacagtgaggagggactggctccagagctccagggctctttcctgctggggcgg
acaagccaacagcaagcctcagcacactttgaaggagccatctgtcagtttgacctggtc
ccttctgcacaagcagctcacaactactgcaggtacattaagaaacagtgcagggaagct
gacacatacaggcctaaccttcctcccttgttgcctatcctacaacgagaaacaaacatc
acagctaccgctgctacccctaaacgtggtggcccagaaacgcccaggaagaccacgggg
ctgagccttgccaggagtgttgccgctgctgcctcggctgtcagatatgtggcccccacc
caaacaataaagcccagccctgggacaatttctacaccccttctgggaactgtgatgcca
gtcacagtccagcttggtatggcctccccgcctccaaaggccaggactgaaagtgtcaca
gcaccacttgggacaagagcacccccgacaaaaccaccaaacccaaaacccaccccctct
aaagcttcaaatcagaaaccctccaaacaaacccccccaaagcccactcctcataacaac
tccaaaaagacgattgcaggaacagacaagaagaagaaacctactattccagccactact
accaccaaaccctccaagaccaagcctgactctgccttatcagaacaaggtgcagtccca
aagaaaccacaacccaccacggccaagaaaacatctcccaaacctaaagttacgccatcc
aaagccactccgtccaaacccaaaacaaattctgtcaaagttgtcccttctaaaccatcg
atatacaaagttaacccctcaaaatcaacaatctccaaaactacaactgctaaaacctcc
aagccagtctccaaacaggtcatcaaacctacgaagcaaaccaaaaccaccaaggctaca
gtcaccccacaaccaaccagaccttcgtacaacccagtaacaccacctgctactgatggc
ttccagagctgggaggtgccacctactcagttctccctgctggctggacctataggacag
aaaggagaagcaggcccatggggactgccaggacctccagggaagccaggcctgccgggc
aagaggggtcctcggggcgcccctggtccccatggaaaccctggccgagctggtccaccc
gggctcaagggcagaaaaggagaccctggcatctcacctgggccagcaccaaaaggagag
aagggagactcagggattcttggcccggttggactgactggccaggaaggtcggaaggga
cagaaaggttaccctggtccacctggactccctggtgagcctggagaacaaggtccagtc
ggaagcccaggtgccaaaggttatcctggcaggcagggtttacccgggcctataggacca
atggggcctaaaggcgttcggggtttcattggaatcccggggctttttggcctgcctggg
cctgatggcgaaagaggcattcccggtgaaccagggaagaggggcaagatgggtaggccg
gggtttccaggggactttggggagagaggaccacctggaccagatggagagccaggtgag
ctgggagcccccggtccaaacggagttcttggacttattggtgatatgggacctttggga
gagatgggccttccaggacctaatggactgaagggggtgccaggaaatccaggagaacca
ggactgaaaggtgataagggtgacattgggattcccggagaacaaggggagattgggtac
agaggcgacaagggcatccagggggctccagggttaccaggcatccgtgggaaaccagga
ccacagggaaagttaggagagagaggccctgctggtgcacctggaccaccgggccctgag
ggtttccctggtgacatgggaccaccgggagagaacggccttgaaggaccaaagggaaag
ccaggggccagaggtttaccggggccccgaggggtgcctggcttagagggagatgagggc
ccgatcggcccaccgggcccaacaggactggagggcagaatgggcaggaaaggatttcct
gggaaggttgggccagagggagttaagggagagcccggtgtcacaggaaatgttggaacc
atgggagaaagaggtttggtgggtttcatcgggcctgtgggagaggccggactggcagga
gagaagggggatcgaggggagatgggccatcccggaccacctggagaaaagggatcaacg
ggtcacccagggacaccaggtgagaccgggcccaaaggaccaccaggaagaccaggtact
cctggagcgattgggccagccggtaccagaggacccaaaggcttacggggagcgataggg
cctgacggtccaacaggagagatggggttagagggcaagacgggtactgatggtcctcca
ggaaaaataggtttccctggaccacaggggaagatcggagagtcaggggaaactgggcct
aaaggttttcctggtattcaagggccctcaggacctcccggggacaagggaataccaggc
gagccgggatcacctgggcctccagggactgtgggactgttaggagaaattggtcaaaag
ggtcctccaggcatgctgggggaaccaggactgccaggcgagccaggggagaagggagcc
attggacctgttgggaacatcggagagcagggaataataggacagcggggagagccaggc
ctagagggagaagctggtccagctggtcccgatggagctaagggtgaaaaaggtgacatg
ggacaggagggcgacaatggagaaaaaggtgaaattgggctaaagggaaaggagggccca
cctggaagtcctggactcaccggcgtcagaggtccagaagggaaacctggcaaaattggg
gaaggaggcaaacaagggccaaagggtgccaaaggtcatcaaggacaccttggggagact
gggacggtgggaaagactggaccaccaggttttgttgggcagaaggggtccagaggaacc
attggacacgtgggagctcctggtcgaatgggtcaacagggggaacttggtcttgcaggt
tatgagggccatcagggaccacagggccctattgggcctccaggaccaaaaggtgaaaag
ggtgagcagggggatgatgggaaagtagagggtcctcctggtcctccaggtgacataggt
actccaggtgaccgtggagagagaggggaatcaggagatccggggtataaaggtcaagtt
ggtgtggatggggaaagaggcaggcctggagctcctggacaacctggacagcctggacct
cgagggcaacaaggacccaaaggggccaaaggagatcaaggtcagaaaggcaaaaaaggc
cagttgggacaaaaaggaaacagaggacaggagggtgagggtggtcttcccggtcccaga
ggtgtggtgggccgagagggactggagggtgtgcccgggatggatggagtccctggaaaa
gatggcagtaaaggcatgccgggagaacatggtgatgatggggaggatggtttttctggc
aaagctggcttacgtggtaaatctggcgttccaggactcccaggagatcaggggaccatt
ggaccaaagggtgagcagggtcttcgaggccagagtggacctccaggaaaaagaggcttc
agaggtggaatgggactgccagggccacagggagaccaaggccctaaaggacaacctggt
gatacaggggaagcaggttttccaggaattccgggagtttttggaccaagggggcctcca
ggagactttgggccaaagggcatacggggaccaaaagggccacagggtgcaatgggcaga
ggaggagtcattggccctatgggaatcattggtcccaatggaagcgcaggtcctagagga
gagaagggcaatcatggagagactggattgcaaggcccaatggggtctcctggacctcgt
ggacctcctggacttccaggtcgcccgggtatccctctgtcatttaaggaagatggtctt
ttggtaatggattcacacacccgactcaggactcagaataagccggcgatggacctgccg
atgctggaccagggcgcagagatctttaagaccctccactacctcagtaacctgatccag
agcctgaagaacccactgggcactcgggacaaccccgcacgcatctgcagggacctgcac
agctgtgaacagaagttaaacgatggcacttattggatggaccctaacctgggctgctca
tcagatacaatagaagtctcctgcaactttactggcggtggacagacttgcctaaaacca
ataacggtatccaagccagcaatcagtgtcggtcgtgtccagatgaacttcctgcacctg
ctgagctcagaggcagagcaacacatcatcattcactgcctgaacatctcggtttggagg
tcagctgaggatcagccggccacccaggactctgtgagattcaaggcctggagtggggag
gtgttcgaggttggaggacagctcgagccagaagtcttggaagactcctgctggataaaa
gatggccgctggcaccaaacccattttgtgttccactccctggatccctccctgctccct
ctggtcgacatctacaacctccccaagactacacctggctcacattaccacctagaagta
ggtcctgtatgcttcctgtga

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