Perca flavescens (yellow perch): 114571011
Help
Entry
114571011 CDS
T07494
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114571011
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114571011
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114571011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114571011
NCBI-ProteinID:
XP_028457557
LinkDB
All DBs
Position
16:22686690..22764190
Genome browser
AA seq
1766 aa
AA seq
DB search
MNLGTRRRDCRTSHLDTKRALLLCTVLYCTCYLGLTQVHSEDVDIIQKLGLKGEKPSRSV
PAGVIPFRSGIILNQRAHIETPLRSLFPAAIWPNLALVLSVRSHRVNSAFLFTLLSGRKK
LLLGLQLAPGNLVLHTGPNTSVALPYEPHDGQWHQLAVGINGQRVTLYASCGEQSVHADF
GWDSEEGLAPELQGSFLLGRTSQQQASAHFEGAICQFDLVPSAQAAHNYCRYIKKQCREA
DTYRPNLPPLLPILQRETNITATAATPKRGGPETPRKTTGLSLARSVAAAASAVRYVAPT
QTIKPSPGTISTPLLGTVMPVTVQLGMASPPPKARTESVTAPLGTRAPPTKPPNPKPTPS
KASNQKPSKQTPPKPTPHNNSKKTIAGTDKKKKPTIPATTTTKPSKTKPDSALSEQGAVP
KKPQPTTAKKTSPKPKVTPSKATPSKPKTNSVKVVPSKPSIYKVNPSKSTISKTTTAKTS
KPVSKQVIKPTKQTKTTKATVTPQPTRPSYNPVTPPATDGFQSWEVPPTQFSLLAGPIGQ
KGEAGPWGLPGPPGKPGLPGKRGPRGAPGPHGNPGRAGPPGLKGRKGDPGISPGPAPKGE
KGDSGILGPVGLTGQEGRKGQKGYPGPPGLPGEPGEQGPVGSPGAKGYPGRQGLPGPIGP
MGPKGVRGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGFPGDFGERGPPGPDGEPGE
LGAPGPNGVLGLIGDMGPLGEMGLPGPNGLKGVPGNPGEPGLKGDKGDIGIPGEQGEIGY
RGDKGIQGAPGLPGIRGKPGPQGKLGERGPAGAPGPPGPEGFPGDMGPPGENGLEGPKGK
PGARGLPGPRGVPGLEGDEGPIGPPGPTGLEGRMGRKGFPGKVGPEGVKGEPGVTGNVGT
MGERGLVGFIGPVGEAGLAGEKGDRGEMGHPGPPGEKGSTGHPGTPGETGPKGPPGRPGT
PGAIGPAGTRGPKGLRGAIGPDGPTGEMGLEGKTGTDGPPGKIGFPGPQGKIGESGETGP
KGFPGIQGPSGPPGDKGIPGEPGSPGPPGTVGLLGEIGQKGPPGMLGEPGLPGEPGEKGA
IGPVGNIGEQGIIGQRGEPGLEGEAGPAGPDGAKGEKGDMGQEGDNGEKGEIGLKGKEGP
PGSPGLTGVRGPEGKPGKIGEGGKQGPKGAKGHQGHLGETGTVGKTGPPGFVGQKGSRGT
IGHVGAPGRMGQQGELGLAGYEGHQGPQGPIGPPGPKGEKGEQGDDGKVEGPPGPPGDIG
TPGDRGERGESGDPGYKGQVGVDGERGRPGAPGQPGQPGPRGQQGPKGAKGDQGQKGKKG
QLGQKGNRGQEGEGGLPGPRGVVGREGLEGVPGMDGVPGKDGSKGMPGEHGDDGEDGFSG
KAGLRGKSGVPGLPGDQGTIGPKGEQGLRGQSGPPGKRGFRGGMGLPGPQGDQGPKGQPG
DTGEAGFPGIPGVFGPRGPPGDFGPKGIRGPKGPQGAMGRGGVIGPMGIIGPNGSAGPRG
EKGNHGETGLQGPMGSPGPRGPPGLPGRPGIPLSFKEDGLLVMDSHTRLRTQNKPAMDLP
MLDQGAEIFKTLHYLSNLIQSLKNPLGTRDNPARICRDLHSCEQKLNDGTYWMDPNLGCS
SDTIEVSCNFTGGGQTCLKPITVSKPAISVGRVQMNFLHLLSSEAEQHIIIHCLNISVWR
SAEDQPATQDSVRFKAWSGEVFEVGGQLEPEVLEDSCWIKDGRWHQTHFVFHSLDPSLLP
LVDIYNLPKTTPGSHYHLEVGPVCFL
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggcacccgaaggagagattgcagaacctctcatctagacacaaagagagcc
ctattgctctgtaccgtattatattgtacttgttacctgggacttacacaagtacactct
gaagatgtggacatcattcaaaagttggggctcaagggagagaaaccgtcacgctcggtg
ccagcaggggtcattccattcagatcggggatcatcctcaaccagcgggcgcacattgaa
actccattgcgctcactcttcccagcggccatctggccgaacctggcactggtcctgagt
gtgcgctcacaccgtgtcaacagtgctttcctcttcaccctgctctcaggccgcaagaag
ctccttcttggtctgcagcttgcaccgggcaatctggtccttcacacgggaccaaacacc
tcagtggcactcccctatgagccccatgatggtcagtggcaccagctggcggtgggaatt
aatggacagagagtgactctatatgcctcctgcggagagcagagtgttcatgcagatttt
gggtgggacagtgaggagggactggctccagagctccagggctctttcctgctggggcgg
acaagccaacagcaagcctcagcacactttgaaggagccatctgtcagtttgacctggtc
ccttctgcacaagcagctcacaactactgcaggtacattaagaaacagtgcagggaagct
gacacatacaggcctaaccttcctcccttgttgcctatcctacaacgagaaacaaacatc
acagctaccgctgctacccctaaacgtggtggcccagaaacgcccaggaagaccacgggg
ctgagccttgccaggagtgttgccgctgctgcctcggctgtcagatatgtggcccccacc
caaacaataaagcccagccctgggacaatttctacaccccttctgggaactgtgatgcca
gtcacagtccagcttggtatggcctccccgcctccaaaggccaggactgaaagtgtcaca
gcaccacttgggacaagagcacccccgacaaaaccaccaaacccaaaacccaccccctct
aaagcttcaaatcagaaaccctccaaacaaacccccccaaagcccactcctcataacaac
tccaaaaagacgattgcaggaacagacaagaagaagaaacctactattccagccactact
accaccaaaccctccaagaccaagcctgactctgccttatcagaacaaggtgcagtccca
aagaaaccacaacccaccacggccaagaaaacatctcccaaacctaaagttacgccatcc
aaagccactccgtccaaacccaaaacaaattctgtcaaagttgtcccttctaaaccatcg
atatacaaagttaacccctcaaaatcaacaatctccaaaactacaactgctaaaacctcc
aagccagtctccaaacaggtcatcaaacctacgaagcaaaccaaaaccaccaaggctaca
gtcaccccacaaccaaccagaccttcgtacaacccagtaacaccacctgctactgatggc
ttccagagctgggaggtgccacctactcagttctccctgctggctggacctataggacag
aaaggagaagcaggcccatggggactgccaggacctccagggaagccaggcctgccgggc
aagaggggtcctcggggcgcccctggtccccatggaaaccctggccgagctggtccaccc
gggctcaagggcagaaaaggagaccctggcatctcacctgggccagcaccaaaaggagag
aagggagactcagggattcttggcccggttggactgactggccaggaaggtcggaaggga
cagaaaggttaccctggtccacctggactccctggtgagcctggagaacaaggtccagtc
ggaagcccaggtgccaaaggttatcctggcaggcagggtttacccgggcctataggacca
atggggcctaaaggcgttcggggtttcattggaatcccggggctttttggcctgcctggg
cctgatggcgaaagaggcattcccggtgaaccagggaagaggggcaagatgggtaggccg
gggtttccaggggactttggggagagaggaccacctggaccagatggagagccaggtgag
ctgggagcccccggtccaaacggagttcttggacttattggtgatatgggacctttggga
gagatgggccttccaggacctaatggactgaagggggtgccaggaaatccaggagaacca
ggactgaaaggtgataagggtgacattgggattcccggagaacaaggggagattgggtac
agaggcgacaagggcatccagggggctccagggttaccaggcatccgtgggaaaccagga
ccacagggaaagttaggagagagaggccctgctggtgcacctggaccaccgggccctgag
ggtttccctggtgacatgggaccaccgggagagaacggccttgaaggaccaaagggaaag
ccaggggccagaggtttaccggggccccgaggggtgcctggcttagagggagatgagggc
ccgatcggcccaccgggcccaacaggactggagggcagaatgggcaggaaaggatttcct
gggaaggttgggccagagggagttaagggagagcccggtgtcacaggaaatgttggaacc
atgggagaaagaggtttggtgggtttcatcgggcctgtgggagaggccggactggcagga
gagaagggggatcgaggggagatgggccatcccggaccacctggagaaaagggatcaacg
ggtcacccagggacaccaggtgagaccgggcccaaaggaccaccaggaagaccaggtact
cctggagcgattgggccagccggtaccagaggacccaaaggcttacggggagcgataggg
cctgacggtccaacaggagagatggggttagagggcaagacgggtactgatggtcctcca
ggaaaaataggtttccctggaccacaggggaagatcggagagtcaggggaaactgggcct
aaaggttttcctggtattcaagggccctcaggacctcccggggacaagggaataccaggc
gagccgggatcacctgggcctccagggactgtgggactgttaggagaaattggtcaaaag
ggtcctccaggcatgctgggggaaccaggactgccaggcgagccaggggagaagggagcc
attggacctgttgggaacatcggagagcagggaataataggacagcggggagagccaggc
ctagagggagaagctggtccagctggtcccgatggagctaagggtgaaaaaggtgacatg
ggacaggagggcgacaatggagaaaaaggtgaaattgggctaaagggaaaggagggccca
cctggaagtcctggactcaccggcgtcagaggtccagaagggaaacctggcaaaattggg
gaaggaggcaaacaagggccaaagggtgccaaaggtcatcaaggacaccttggggagact
gggacggtgggaaagactggaccaccaggttttgttgggcagaaggggtccagaggaacc
attggacacgtgggagctcctggtcgaatgggtcaacagggggaacttggtcttgcaggt
tatgagggccatcagggaccacagggccctattgggcctccaggaccaaaaggtgaaaag
ggtgagcagggggatgatgggaaagtagagggtcctcctggtcctccaggtgacataggt
actccaggtgaccgtggagagagaggggaatcaggagatccggggtataaaggtcaagtt
ggtgtggatggggaaagaggcaggcctggagctcctggacaacctggacagcctggacct
cgagggcaacaaggacccaaaggggccaaaggagatcaaggtcagaaaggcaaaaaaggc
cagttgggacaaaaaggaaacagaggacaggagggtgagggtggtcttcccggtcccaga
ggtgtggtgggccgagagggactggagggtgtgcccgggatggatggagtccctggaaaa
gatggcagtaaaggcatgccgggagaacatggtgatgatggggaggatggtttttctggc
aaagctggcttacgtggtaaatctggcgttccaggactcccaggagatcaggggaccatt
ggaccaaagggtgagcagggtcttcgaggccagagtggacctccaggaaaaagaggcttc
agaggtggaatgggactgccagggccacagggagaccaaggccctaaaggacaacctggt
gatacaggggaagcaggttttccaggaattccgggagtttttggaccaagggggcctcca
ggagactttgggccaaagggcatacggggaccaaaagggccacagggtgcaatgggcaga
ggaggagtcattggccctatgggaatcattggtcccaatggaagcgcaggtcctagagga
gagaagggcaatcatggagagactggattgcaaggcccaatggggtctcctggacctcgt
ggacctcctggacttccaggtcgcccgggtatccctctgtcatttaaggaagatggtctt
ttggtaatggattcacacacccgactcaggactcagaataagccggcgatggacctgccg
atgctggaccagggcgcagagatctttaagaccctccactacctcagtaacctgatccag
agcctgaagaacccactgggcactcgggacaaccccgcacgcatctgcagggacctgcac
agctgtgaacagaagttaaacgatggcacttattggatggaccctaacctgggctgctca
tcagatacaatagaagtctcctgcaactttactggcggtggacagacttgcctaaaacca
ataacggtatccaagccagcaatcagtgtcggtcgtgtccagatgaacttcctgcacctg
ctgagctcagaggcagagcaacacatcatcattcactgcctgaacatctcggtttggagg
tcagctgaggatcagccggccacccaggactctgtgagattcaaggcctggagtggggag
gtgttcgaggttggaggacagctcgagccagaagtcttggaagactcctgctggataaaa
gatggccgctggcaccaaacccattttgtgttccactccctggatccctccctgctccct
ctggtcgacatctacaacctccccaagactacacctggctcacattaccacctagaagta
ggtcctgtatgcttcctgtga
DBGET
integrated database retrieval system