Perca flavescens (yellow perch): 114571708
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Entry
114571708 CDS
T07494
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114571708 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114571708 (msh6)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114571708 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
114571708
NCBI-ProteinID:
XP_028458624
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All DBs
Position
17:14305740..14314328
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AA seq
1373 aa
AA seq
DB search
MAKQSSLFNFFKKSPPPVSKPKPSLSPAEADLPSSVEKSSSPKEQAKQTPQQLTKTNKVK
PKSTKSSKGGFNKLFGDTAPTTKPSNTCPFSAGVLVWAKLEGHPWWPCMVVPQPLTGQQM
RGRGRDQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIRHAMELAD
GVMFDSPEKRLKMPLCMDPSDEEDDEEMELDKSTLTDEEVSDEEEEENENVKLSEVSRRS
SRASTEKGNKAKRRRIVVASDSDGSDEEFKPEQAASSSEDELEEAAAVSSEEESTHESEA
ESPIKLVKRKRPAEKPASTKAKMPTTPSTAPKRAPAAVAVDTKSRLSAFSAPDNFESQAN
GSGTVGSATIWDHEKLEWCQDGRRKDSRRRRQTDDDYDPTTLYVPEDFLNRNSPGMRRWW
QLKSEMFDTVIFYKVGKFYELYHMDAVIGVNEMGLTFMKGTWAHSGFPEIGFGRFSDVLV
QKGYKVARVEQTETPEMMEARCKSMAKPTKFDRVVRREVCRIITRGTQTYSVLDGAPSES
QSKFLLSVKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAHFAPAE
VLFERGNPSVETRKIFKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFRETAGKEQGK
GNNFLPAPLKKMTSESDSLCLTPKESYELGLSALGGCIFYLKKCLVDQELLSLANFEEYV
PVDVELEKAAEPASFFAQTRQRVVLDAVTLANLEIFQNGSGGREGTLLERLDTCSTPFGK
RLLKQWLCAPLCNPTSIKDRLDAVEDLIGAQAQATEVSDLLKKLPDLERLLSKIHSIGTL
KGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIITVLTPVTAQSRSALLRQVAS
LQSEKDGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQALASIKNCERELQD
YLDRQKKRIGCKSMSYWGTGRNRYQMEVPDSVSERNIPEEYDVKSTKKGWKRYVTKETER
LFSELQAFEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVIDVLLSLSRYSQGGDGP
MTRPQVVLPEGDDQVVAFLDLTGSRHPCVTKTFFGDDFIPNDIYIGCPGSDETDEKKEHA
SCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGASDRIMAGE
STFFVELSETASILHHATKHSLVLVDELGRGTATYDGTAIASAVVKELAEKVCCRTLFST
HYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFNAARLAS
LPEVVIQSGHRKAREFEKSTISLRLFKKLCQFADDPTLSKTHFASLVQMLNTI
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaatttcttcaagaagtctccgccgccggtctccaag
ccgaagccgagtctctctccggccgaggcagacctgccttcctccgtagagaagtcctct
tctccgaaagagcaagctaaacagacaccgcaacaactaaccaagaccaacaaagttaag
ccaaaaagcaccaagtcttcgaaagggggattcaacaaactgtttggcgacacggcccca
acaaccaaaccaagcaacacatgcccattcagtgctggtgtccttgtgtgggctaaactg
gagggacacccctggtggccatgcatggtggtaccccaacctctgactggacagcagatg
aggggccggggtcgagaccaacgcatacatgtccatttctttgatgaaccccccactaga
ggatgggtcagcaccaaatatatccgagagtaccaaggctctgacagcagtgatgctaaa
acgggaggagtgttcttcagcggcaaacctgtcatccgtcatgcaatggagctcgctgat
ggagttatgtttgacagccctgaaaaaagattaaagatgcctctctgtatggatccatcc
gatgaagaggatgatgaagaaatggagcttgacaagtcaacattgactgatgaagaggtt
agtgatgaggaagaagaggaaaatgagaacgtgaaattgtccgaggtcagtcgacgttca
tcccgtgcgtcaacagagaagggaaataaggccaagcgccgccgcatagttgtagcttca
gacagcgatggatcagatgaggaattcaaaccagagcaggctgcgtccagcagtgaggat
gagctggaagaagcagcagcggtgagcagtgaagaggagagcacacatgagtcggaagca
gaaagccccatcaagcttgtaaagcgcaaacgtcctgccgaaaagcctgcttctacaaaa
gccaagatgcctactaccccgtctactgctccaaaacgtgctccagcagctgttgcggtc
gacacaaagtctcgtctgtcagccttctctgcccctgacaactttgagagccaggcaaat
ggatcaggcaccgttggaagcgccacaatttgggaccatgagaagctggagtggtgccag
gatggcaggaggaaagacagccgacggcggcgacagaccgacgatgactatgatcccacc
acgctgtatgtaccagaagactttctaaaccgaaacagtcctggtatgcgtcgctggtgg
cagctcaaatctgagatgtttgatacggtcattttctacaaagtggggaagttttatgag
ctctaccacatggatgctgtgatcggcgtcaacgagatgggactaacgttcatgaagggg
acctgggcacactccggcttcccagagattggctttgggcgtttctcagatgtgctggtc
cagaaaggctacaaggtggctcgtgtggagcagacggagaccccagagatgatggaagca
cgctgtaagagcatggctaagcccacaaagtttgaccgtgtggtgagaagagaagtgtgc
cggattatcacacgtggtacccagacatacagtgtgttagacggtgcgccttctgagagt
cagagcaagttcctgctgagtgtaaaggaaaaggctgaagaggaaagctccggtcgctgc
cgtacatacggagtctgctttgtggatacctctgtgggttattttcacgttggtcagttc
ccagacgatcgtcactgctcacgtctgcgcaccctaatagcacactttgcccctgctgaa
gtgctctttgaaaggggaaacccatccgttgaaacgcgcaaaatattcaaggcctctctg
tcctctgctttgcaggaaggacttaatgccggcacccagttctgggatgctcagaagact
ctgaaaaccctttcagaagaagattactttagagagactgctggcaaggaacaagggaaa
gggaacaactttcttcctgctcctctaaaaaagatgacctctgagagtgattccctgtgc
cttactcccaaagagagctatgagctgggactgtcggcactgggtggatgcattttctat
ctgaagaaatgtctggtagaccaagagctgctctctttggccaactttgaagaatatgtc
cctgttgatgttgagctggagaaagctgcagaaccggccagtttctttgcccaaactcgt
cagcgggtggtcctcgatgcagtgactctggcaaacttagaaatctttcagaatgggtca
ggaggaagagaagggacgctgctggagcgtttggacacctgctctaccccgtttggcaag
aggctgctgaagcagtggctctgtgcgcctctgtgtaaccccacatccatcaaggaccga
ctggatgcagtggaagacctgattggagctcaggcccaggctactgaggtttcagacctg
ctgaagaagctcccagatttggagcgtcttctgagcaaaattcacagcattggcactcta
aagggccaggatcaccctgacagcagagcagttctctatgaggaggtcacctacagcaag
cgcaagatagcagacttcctctcagcactggaaggtttcaaaactatgcaggagatcatt
actgtcctcactccggttacagcccaatctcgatccgcattgctccgtcaagtggccagt
ctgcaaagtgaaaaggacggcctctttcccgacctctctgctgaactcaggcgctgggag
acagccttcgaccaccagaaagcccgcactactggtgtcataacgcctaaagctggcttt
gaccccgagtacgaccaggctctggcgtccatcaagaactgtgagcgagagctgcaggat
tacctggacagacagaagaagaggattggctgtaagagcatgtcctattggggaaccggg
cgaaaccgctaccagatggaggtgcctgacagtgtctcagagaggaatattcccgaggag
tacgacgtgaagtctacaaagaaaggctggaagcgttatgtgaccaaggagaccgaacgg
ctgttctcagagctgcaagcatttgaagagaagagagatgctgccctgaaagactgcatg
aggaggcttttctacaactttgacaagaactacaaagactggaagactggtgtggagtgc
atggcagtgattgatgtgctgctgtccttgtcccgctacagccagggcggagacggcccg
atgaccaggccacaggtggtgctccctgagggggatgaccaggtagtggccttccttgac
ctcactggatcccgccatccctgtgtcaccaagaccttttttggcgacgacttcatcccc
aacgacatctacattggctgccctggtagcgatgaaactgatgagaaaaaagagcatgcc
tcttgtgtcctcgtcacggggccaaacatgggtggaaagtcaactctcatgagacagtgt
ggacttgtgatcatccttgctcagctgggttgctatgttcctgccgagagtctgcgcttc
acaccggttgacagagtcttcactcggctgggagcctcggatcgtatcatggctggagag
agtaccttctttgtggagctaagtgagactgccagcatcttgcaccatgccactaaacac
tcgcttgtgctcgtggatgaattaggaaggggcacagccacatatgatggcacagcgatt
gccagtgctgttgtgaaggagcttgctgagaaggtctgctgtcgcaccctcttctctaca
cattatcactccctggtggaggactacgccaacaaccctgctgtgcgtttgggccacatg
gcatgcatggtggagaatgaatgcgaggatccaagtcaagagacaatcacattcctctac
aagttcatcactggcgcttgtccaaagagttatggcttcaatgctgctcgactggccagc
ctgccagaggtggtcatccaatcaggacacaggaaggccagagagtttgagaagagcacc
atcagcctcagactcttcaagaagctctgccagtttgctgacgatcctacactgagcaag
acacactttgcttcacttgttcagatgctcaacaccatatag
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