Perca flavescens (yellow perch): 114572102
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Entry
114572102 CDS
T07494
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04120
Ubiquitin mediated proteolysis
pflv04137
Mitophagy - animal
pflv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114572102 (prkn)
04120 Ubiquitin mediated proteolysis
114572102 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
114572102 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pflv04131
]
114572102 (prkn)
04121 Ubiquitin system [BR:
pflv04121
]
114572102 (prkn)
03029 Mitochondrial biogenesis [BR:
pflv03029
]
114572102 (prkn)
Enzymes [BR:
pflv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
114572102 (prkn)
Membrane trafficking [BR:
pflv04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
114572102 (prkn)
Aggrephagy
Other aggrephagy associated proteins
114572102 (prkn)
Xenophagy
Other xenophagy associated proteins
114572102 (prkn)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
114572102 (prkn)
Mitochondrial biogenesis [BR:
pflv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
114572102 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
IBR_2
IBR
IBR_1
ubiquitin
Motif
Other DBs
NCBI-GeneID:
114572102
NCBI-ProteinID:
XP_028459352
LinkDB
All DBs
Position
17:complement(34419859..34434005)
Genome browser
AA seq
310 aa
AA seq
DB search
MIVFVRYQCGPPLPVELGASVSDLKELVGGQQGVSAHRLRVLFAGRELRDCYTLQEFYMK
CASHPTSDDDLSVALNLIMTNSRDVPCIACTDIMDVVVVFQCLERHVICLDCFRGYCQTR
LNERQFVYDPVIGYSLPCAAGCADSLIKELHHFRILGDDQYGRYQQYGAEQCLQLIGGLQ
CPSAGCGAGLLPSDGGRRVECDRRLGCGFVFCRLCRERYHEGACLTAQAPPTAEAAQGFV
SGEEASLRARWDAASLLLVQESTKRCPRCSVPTERDGGCMHMRCPLCQAEWCWLCRVSWN
TECMGNHWFG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattgtatttgtgcggtaccagtgcggcccccccctgcctgtggagctgggggccagc
gtctctgatctgaaggaactggtgggggggcagcagggagtctcagcgcacagactcagg
gtgctgtttgctgggagggagctgagagactgctacaccttacaggagttctacatgaag
tgtgcgtcccatccaacctctgatgacgacctctctgtggccctcaacctcatcatgacc
aacagcagagatgtcccctgcatcgcctgcaccgacatcatggacgtggtggtggtgttc
cagtgtttggagcgtcatgtgatctgtctcgactgtttccgtggttactgtcagactcga
ctgaacgagcgacagtttgtgtacgaccctgtgattggctactctctgccgtgtgccgcc
ggctgcgctgactctctcattaaggagttgcatcatttcaggattttgggagacgatcag
tatgggcggtaccagcagtacggggcggaacagtgcctgcagctgattggagggctgcag
tgtccgtcagcaggctgtggggcggggcttctgccgtctgatggcggccggagggtggag
tgtgaccgccggctcggctgtggcttcgtcttctgccgactctgccgggagcgctaccac
gagggggcgtgtcttacagcgcaggccccgcccacagccgaggccgcacagggctttgtg
tcgggggaggaggcgtccctcagagcgagatgggatgcagcctcgctgctcctggtgcag
gagtcgactaaacgctgcccgcgctgctcggttcctacggagagagacggcggctgtatg
cacatgcggtgtcctctgtgccaagccgagtggtgttggctctgccgagtctcctggaac
accgaatgtatggggaaccactggttcggataa
DBGET
integrated database retrieval system
