Perca flavescens (yellow perch): 114572446
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Entry
114572446 CDS
T07494
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114572446 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114572446 (parn)
Enzymes [BR:
pflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114572446 (parn)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114572446 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
114572446
NCBI-ProteinID:
XP_028459886
LinkDB
All DBs
Position
2:complement(11895533..11906074)
Genome browser
AA seq
673 aa
AA seq
DB search
MEVTRQNYKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTKSKYITKSFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEAQLREQTEERRNQHANGVGTPSYSSPSSKGTAHVPEEHKDY
INRVIEKVEALFANSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQV
SKVDDEERKRREQQKQEREQEELNDAVGFSRVIHAISKSAKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQVE
TAEGFPGYDTAQGQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISAHSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGRQQDKEKLNQTPKSWGEDCWMKPPYT
SATCAGFGYARGLRKRSISPAQGEQGARDAQITDGWSQSYPDSTGSKKMKTDDKSGLAIE
SKTSEGWLKTADASDSAGSSPVPDEEERSPEGNDAEGTVTWQQVHGKRGQKNKKKKSKGA
KSTTSLFEVPEVW
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattataaagacagtttaaacacggtgtacagcgcgatagag
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactcaccaacggactggacacaccggaggagcgatacacgaagcttaaaaagcac
tcaatggactttctgctgttccagttcggattatgtacattcacgtacgaccagacaaag
tcaaagtatatcacaaagtcttttaatttttatgtattcccgaaaccgttcaacaggaca
tcccccgacttaaagttcatctgtcaaagttccagtatcgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtcatggaatcccatatctaaaccaagacgaggaagcc
cagctgagggagcagacagaggagaggagaaatcaacatgctaacggtgtagggacacca
tcctacagctccccctcctccaaaggcactgcacacgtaccggaggagcataaagactac
atcaacagggtgatagagaaggttgaggctctcttcgctaactcggagaagactttggac
ttggacccatgtactgggtttcagagaaagctgatataccagacactgaactggaagttt
cccaaggggcttcatgtggaaactgtggaaacagaaaagaaagagcgatacatccaggtc
agcaaagtggatgatgaggagaggaagaggagggaacaacagaaacaagagagagagcag
gaggagctaaatgatgctgtgggcttctccagggtcatccacgccatctctaaatctgct
aaacttgtggttggtcacaacatgctgttggatgtgatgcacaccatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccaaga
attctggacacaaagttgatggcttccactcagccctttaaggagctgatcactaacacg
tctctggcagagttggagaaacagctgaaggagagccccttcaagtcaccacaagttgaa
acggcagaggggttccccggttatgacacagcccagggacagctccacgaggccgggtac
gatgcctacatcactggcctctgtttcatctcaatggccaactacctgggctctttcttg
actccacccaaagcgtacatctctgctcactccaaactaattgagcctttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttgcaa
cctaaaagagaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgacctc
taccagctctttagtgccttcggaaacatccaggtttcctggatagacgacacgtcagca
tttgtgtccctaagtcagacggaccaggtacagatagctatgaacaccagccgctacgca
gagagttacaggatccagacgtatgcggagtacatccagggtaggcagcaggacaaggag
aagctcaaccagactcccaaatcatggggagaggactgctggatgaaacctccctacacc
tctgctacttgcgctggttttggatatgccaggggtttgaggaaacgcagcatcagtccc
gctcagggggagcagggggccagagacgctcaaattacagacggctggagtcagtcatac
ccggatagcacaggcagcaagaagatgaaaactgatgacaaaagtggactagctatcgag
agcaagacctcagaaggatggctaaagactgcagatgcatcagattcagcggggtccagt
ccagtccctgatgaggaggagcgaagtcctgaaggcaatgatgctgaggggacggtcacc
tggcaacaagtccatgggaagagaggtcaaaagaacaagaaaaagaagtccaaaggggct
aaatctacaacgtcgctgtttgaggtcccggaagtctggtag
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