Perca flavescens (yellow perch): 114572508
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Entry
114572508 CDS
T07494
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114572508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114572508
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114572508
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
114572508
NCBI-ProteinID:
XP_028459979
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Position
2:complement(22053373..22067315)
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AA seq
557 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDESESKDEDEEGKLNAAVSAPADASTEDDAAAHA
TGNGVASEATGEAAGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNLNIKTT
GSRPYGQASKMKGVDLDAPGNINGVPVLEADMESFEEKPWRKPGADLSDYFNYGFNEDTW
KAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDISTLPVHTSKPDFTSPVSMYKP
AVSQVPRNRDSSDQATFFPSSTVQFWKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQV
IAEQSDAEPTPAKIPTFFPPGPLPPNIPPPPFLPPPPNVNTAPPLIPPPRLPITVPPPGF
PPPPSGPPPAIIPTMDSGHPGGYDGRSVPPYPFPQGAYPPPMAGGVPPPWPPMMDNSKPW
DYYSRRDDKREKERERPRERERTHEREREREHSPSAMGYTSEEERYRYREYQERGYAERH
RERSSREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGK
EANEEISADQENQEAME
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaagcggacaaaacaaccaccactgacgccagcgctggagatgaggag
gaggaatggttatatggagatgagtctgagagcaaagatgaggacgaagaaggcaaactg
aatgctgcagtcagtgcacctgctgatgcttcaacagaggatgatgctgctgcacacgct
acaggaaatggagtggcctccgaggcgacaggtgaagctgcaggtgaggacgttgacagt
gacagcgacagtgatgatgatgatgatgatgtccgtgtcaccattggagacattaaaact
ggagcaccacagtacacaacttatggagctccacctgtcaatctcaacataaagacgaca
ggctccagaccttatggacaagcctccaagatgaagggagtggatctggatgctcctgga
aacattaatggggttcctgtgctggaggcggacatggagtcctttgaggagaaaccctgg
agaaagccaggagcggatctgtcagactactttaactacggcttcaatgaagacacatgg
aaggcttactgtgaaaaacagaagagactgcggatgggcctggaggtctctacggtcggc
tcggtgacaagcaagatcactgttcagcaaggcaggacaggtaatgagaaggacatatcc
actttgcctgttcacacctccaagccagacttcacatctcctgtcagcatgtacaagcct
gctgtcagtcaggtccccagaaatcgagactcatcagaccaggcaacatttttcccgtct
tcaactgtccaattttggaagacgagtggtactatagacgtgataggtggagggacggcc
accatcagcagggtcgaagggcgacgtagacacaatctagaaggcaacaatatccaggtg
atcgctgaacaatcagacgctgagccgactccagctaagattcccaccttcttccctcct
ggaccacttcctccaaacatacccccgcctcctttcctccctccaccacccaatgtcaac
actgcacccccactcatccccccacccaggttgcccattactgtccctccccctggtttt
cctcctccacctagcgggccccctcctgctatcatccccactatggacagtggccaccca
ggaggttatgatggacgctctgtccctccctaccctttccctcaaggtgcataccctcca
cccatggctggaggggtgcctcctccttggccccccatgatggacaactctaaaccctgg
gattactattcccgtcgagacgacaagagagagaaggaaagagagaggcccagagagaga
gagaggacacatgaacgggagagagagagggaacacagcccttcagctatgggctacacc
agtgaagaggagcggtatcgttaccgcgagtaccaggagcgtggttatgcagagcgacat
cgtgagcggtcgagccgagagaaagaggaaagacacagagagagacggcaccgagagaaa
gaggagggtcgccacaagtcctctcgcagtagcagtagcaggagaaggcacgacagcgag
gagggcgacagccaccggaggcacaaacacaagaagagcaagaggagcaaggagggcaaa
gaggccaacgaagagatcagcgcagaccaggagaaccaggaggccatggagtag
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