Perca flavescens (yellow perch): 114573013
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Entry
114573013 CDS
T07494
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114573013 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114573013 (hbs1l)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114573013 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
114573013
NCBI-ProteinID:
XP_028460684
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Position
18:16231355..16256439
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AA seq
701 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDIYGHSVDDDCCISPATANQFIYSRQERQAPKEGPLEEEEY
EDDVPMSPTISHNLDPLDQAKLYSCLDHMRTVLGDAVPDSILTQAAIKCGFDPQKALDAV
LSEDAKTAPVTRSTNEETASVARVSQEKAPLPQRTKQAAVVEKAKIRDVSHNKLDSEVVP
KVARMTVSGKKQTMGFDVPSTGENGVVTASVRRGGSPENATATPASEATPKRPETPAKGS
NGDEPSTVPTPGRSSGKARQSINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYL
LGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLM
DAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAV
AVNKMDQVNWQQERFQDIITKLGHFLKQAGFKESDVFYIPSSGLSGENLTTRSTVSQLTS
WYSGPSLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAM
PPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRFRA
RILLFNIEVPITKGFPILLHYHTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAIV
EIQTQRPVSLELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgttcgaggttacaactacgatgaagatttcgacgatgatgac
atttatggacattctgtagatgacgactgctgtatatcaccagcaacagcaaatcagttt
atctactctcgtcaagagaggcaagcaccaaaagaggggcctttagaagaggaagaatat
gaagatgatgtacccatgtcccctaccatcagccacaatcttgaccctcttgaccaagcc
aagctgtattcctgtctggaccatatgcggactgttttgggagatgcagtgccagactca
atcctgacccaggcagccataaaatgtggattcgacccacagaaggcattggatgcagtc
ctgtctgaagacgctaagacagccccagttaccagaagtaccaatgaagagaccgcttcg
gtagcaagagttagccaggagaaagcaccgcttccacaaagaaccaaacaagcggccgtg
gttgaaaaagctaaaataagagatgtgtctcacaataaactggactctgaagtggtaccc
aaagtggcccgaatgaccgtctctggcaagaagcagaccatgggctttgatgttcccagc
acaggggagaatggcgttgtcacggcttcggtacgccgtggtggcagccctgaaaacgcc
accgcaacccctgcctcagaggccacgcccaagcgccctgagactccagctaaagggtcc
aatggagacgagccctccacagttcccaccccaggccgctcctctggaaaggctcggcag
tcgatcaatatcaaagctgaattggagaaaaggcaggggggcaaacctctgttaaatttg
gttgttataggtcatgtggacgcgggtaaaagcacactgatgggccacctgctttatctg
ctgggcaacgtcaacaagcgcaccatgcacaagtatgagcaggaatcgaagaaggcggga
aaggcctccttcgcctatgcttgggtcctagacgaaactggcgaggagagggacagaggt
gtgacgatggatgtgggcatgaccaagtttgagacaaactctaaggtggtgaccctgatg
gatgcaccaggacacaaagacttcatccccaacatgatcacaggagctgcacaggccgac
gtggcggtgctggtggtggacgccagccgaggagagtttgaggcaggcttcgaggcgggc
ggtcagaccagagagcatgccctgttggtgcgttcgcttggcgtcactcagctggctgta
gctgtcaacaagatggaccaggtaaactggcaacaagagcgtttccaagacatcattacc
aaacttggccattttctcaagcaggcaggattcaaggagtctgatgttttctacatcccc
agcagcggtctgtcaggagagaacctcaccaccaggagtacagtgtcacaacttacctct
tggtactctggtcccagcctgctggagcagattgacgccttcaaagcgccccagcgatcc
gtagacaaaccgttcagactgtgtgtctccgatgtgttcaaagaccagggttcaggcttc
tgtgttacagggaagatcgaggctggttacattcagaccggagagagaatactggctatg
cctcccaatgaaacctgcactgtcaaaggtattactctacacgatgaggctctggactgg
gccgcagcaggagaccatgtcagcctgaccgtcaccggcatggacatcatcaagatcaat
gtgggctgtgtgttctgtgatcccaaggagcctattcgagtctgtactcgattcagagcc
cgaatccttcttttcaatatcgaggttcccataacaaaaggcttcccaatcttgctgcat
taccacacagtcagtgagccagccaccattaggaaactgatcagcgttttacacaagagc
agcggcgaggtcctcaagaagaaaccaaagtgcttgagtaaaggcatgaatgccatcgtg
gagatccagacccagaggccggtgtcactagagctgtacaaggacttcaaggagctgggc
cgcttcatgctcagatatgtcggctccaccattgctgcaggggttgtcactgagatcaaa
gaatga
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