Perca flavescens (yellow perch): 114573034
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Entry
114573034 CDS
T07494
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv00100
Steroid biosynthesis
pflv01100
Metabolic pathways
Module
pflv_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
114573034 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pflv01006
]
114573034 (fdft1)
Enzymes [BR:
pflv01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
114573034 (fdft1)
Prenyltransferases [BR:
pflv01006
]
Terpene biosynthesis
Squalene/phytoene synthase
114573034 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HTH_24
Motif
Other DBs
NCBI-GeneID:
114573034
NCBI-ProteinID:
XP_028460721
LinkDB
All DBs
Position
18:17717859..17725895
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AA seq
457 aa
AA seq
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MAGVCCKCPVSLSVFKRSLSVTPRGCGTAPRSLLPSWRLGERGLQEAARPSSVLRPSGFY
RHTTFFCLFCQESMSLSLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMTIPLDKKVPMLNDFHTYLYQDGWCFTESQEKDRQVLSDFPTISLEFRNLAQQYRDV
ISDICHRMGAGMADFLEKKVGSMKEWDLYCHYVAGLVGIGLSQLFSASQLEDPEVGRDTE
LANSMGLFLQKTNIIRDYLEDTQEGRAFWPQEAWSQFAGRLEDLAQPEKLESALYCLNLL
VTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQRVVKIRKGQAV
TLMMDATNMSAVQTIIAQYSQEILQKVSHTDPSRDKTLHILALIREKSTLSQSSLASRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQRQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatgctgcaagtgtccagtctctctgtccgtgttcaagcgctctctctcg
gtaacgccgcgaggctgcgggaccgctcctcggtccctcctaccgagctggaggcttggg
gagcggggcctgcaggaggctgcccgtccctccagcgtccttagaccctcaggcttttac
cgacacacgacgttcttctgtctcttttgccaggagtccatgagtttgagtctgcggacc
tgctatctgtacctgaaccaaaccagccggagttttgcggctgtgatacaagcgctggac
ggggagttaaggcatgcagtttgtattttctacctggtgctgcgagcgctggacaccgtc
gaggacgacatgactatccctctggacaagaaggttcccatgctgaatgatttccacacc
tacctgtaccaggatgggtggtgcttcacagagagccaggagaaagaccgacaggttctg
tcggatttccccacgatatcactggaattcagaaaccttgctcagcaatacagagatgtc
atctcagacatctgccaccgtatgggagcaggaatggctgacttcttggaaaagaaagtg
ggatccatgaaggagtgggacctgtattgtcactacgtggccggtctggtcggtatcggt
ctgtctcagctgttctctgcgtcccagctggaggaccccgaggtggggcgcgacactgag
ctggccaactccatgggcctgttcctccagaagactaacatcatccgagactatctagag
gacacacaagagggacgtgccttctggccacaagaggcttggagtcagtttgcaggtcgt
ctggaggacttggcccagccggagaagctggagtcggctctctactgtctcaacctgctg
gtcactgatgctctgcgacacgtcccggatgttattgcctacctgtcccgcctgcgcaac
cagagcgtcttcaatttctgtgccattccacaggtgatggcaatagctacactgtcgaca
tgctacaacaaccccatggtgttccagagagtggtgaagatcagaaagggacaggcagtc
acactcatgatggacgccaccaacatgagtgctgtgcagaccatcatcgcccagtacagc
caggagattttacagaaggtctcccacacggacccgtcgcgggacaagaccctgcacatc
ctggctttaatccgagagaagtccaccctgtcacagtctagcctcgcctccaggacccac
cacctgtcgcccatgtacctgtctgctgccatgctgctcgccgctctcagctggcagtac
ctcagcaccactgcagcacaggcacagggcaccggtgacatgcagagacagtga
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integrated database retrieval system
