Perca flavescens (yellow perch): 114573181
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Entry
114573181 CDS
T07494
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114573181 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pflv04121
]
114573181 (trim54)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114573181 (trim54)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-B_box
zf-C3HC4_4
zf-RING_6
zf-RING_5
zf-C3HC4_3
zf-RING_2
TRIM_CC
Sina_RING
DUF8512
CoiA_N
Costars
DUF1421
Med25
DUF5799
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
114573181
NCBI-ProteinID:
XP_028460980
LinkDB
All DBs
Position
18:27421222..27437678
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AA seq
366 aa
AA seq
DB search
MNFALRPPSAGSSGPGAGRGATMENLEKQLICPVCLEMFSKPVVILPCQHNLCRKCANDI
FQSTNPVWQSRGSSSMASSGTRFRCPSCRHEVVLDRHGVFGLQRNLLVENIIDIYRQQES
SRLVNIKPEQQKQQLLCEEHEEEKINIYCLSCETPTCSMCKVFGKHKDCEVAPLSSVYMR
QKTDLSDGIAILVASNDHVQAVISQMEEICRTVEENGQRQREQLAIRFDSLLAILDERKQ
ELVGLISKQQDDKLKRVQSLIRQHSDHLEVAVTLVESAIQSMEEPHMPVFIQSAKVILEK
IALTARASNMERPELGYESMSHFFIDTDDLADMLRNINFCSGVGDNGEEDPAEGGEESEL
DFCSRF
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgctctcaggcctccatcagcaggcagttctgggcccggcgctggcagagga
gccaccatggagaacctggagaagcagctgatctgcccggtgtgcctggagatgttctcc
aaacccgtggtcatcttgccctgccagcacaacctctgccgcaagtgtgccaacgacatc
ttccagtcaactaaccctgtgtggcagtcccgcggctcctccagcatggcttccagcggc
acccgcttccgctgtccgtcgtgccgccatgaggtggtgctggaccgccacggggtcttc
ggtctgcagaggaacctgctggtggagaacatcatagacatctacagacagcaggagtcc
tccaggcttgtgaacataaagccagagcagcagaagcagcagctgctgtgtgaagaacat
gaagaggagaagatcaatatctactgcctgtcctgtgagacgccgacctgctccatgtgc
aaagtgtttggaaaacacaaagactgtgaagtggcaccgctcagcagcgtttatatgaga
cagaagacagaccttagcgacggcatcgccatcttagtcgccagcaatgaccacgtccag
gcagtcatctctcagatggaagaaatctgccgcactgtagaggagaacggtcaacggcag
agagaacagctagccatccgttttgacagcctgttggccatcttggacgagcggaagcag
gagctggtggggctcatcagcaaacaacaggacgataaactcaaacgtgtccaatctctc
attcgtcagcacagcgatcacctggaggtcgcggtaacgctggtggagtcggccattcag
tcgatggaagagccacacatgcctgtgtttatacagagcgccaaagtcatactggaaaag
atagcattgacagccagggcctcgaacatggagcgtccagagctcggttacgagagtatg
agccatttcttcatcgatacagacgatctcgcggacatgctgaggaacatcaacttttgc
tccggtgtgggagataatggagaagaagatcctgcagaaggtggcgaagagtcagaactt
gacttctgttccagattttaa
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integrated database retrieval system
