Pseudomyxococcus flavus: VZL07_04840
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Entry
VZL07_04840 CDS
T11142
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
pfly Pseudomyxococcus flavus
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfly01011
]
VZL07_04840
Enzymes [BR:
pfly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
VZL07_04840
Peptidoglycan biosynthesis and degradation proteins [BR:
pfly01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
VZL07_04840
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
LysM1_NFP_LYK
TFIIA
SLT_2
Motif
Other DBs
NCBI-ProteinID:
XSE97246
LinkDB
All DBs
Position
1174294..1176606
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AA seq
770 aa
AA seq
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MPPLPLLLLALASAPATGLAPPSTGPSPAKAQVVAPSGASARGAESSAEAGAGNTPAAAA
EAAPEAVKSAGVSQAPAPGVEQPQAVAVETSAAVARQPAGTVETSAAKPSSAAAQTSPAD
AKPSTAAQTSPTAAKPSTAPQASPADAKPSPAAEEAVAAAPEADGVEAALEPGTALVAED
AAEEDEATRDAVESESAELEELRALEGAALDPASRSTAEVMQSLRRLGLANPLRMRMLDA
LDEHTFREDEELPEIPLITDLATFDVAQIQDRYDIPVEMQPLVAQYIQFFQGPGRRWFRK
WMARAARYVPVMHPILEQYGLPKDTVYLAMIESGFSAHAYSWAHAAGPWQFISSTGKQYG
LKQDFWVDERRDPIKATHAAASYLKDLKRELGHWYLAWAGYNTGSGRVRRMVERHGTTDF
WALSEERGLAKETKHYVPKLIAAALVAKHPAAFGFKEEEFDPEPVLEFDEVQLTDAADLD
VVARAAGVPVKAVQDLNPELKRWCTPPASTKKPYTLRLPKGTATLFAENYKRISPAERLT
FRIHKVKRGDTLSQIAEKYGSASEAILQMNQLKSAHKLRVGGELVIPIPTGKRAGSALAT
KVAQARRSGVVVRPEDEVPAGTPRGPVAAGPVKKETINGRTRLTYGVMSGDSLWVIANKF
NVSVDSLKQWNNLKRRNPTLQVGSTLFIWPEGNTATASVQERGGTVLAKHTVSTTKPAGN
AGKVHALAEGETLWSVAQRYGVSVDDIMRWNKIKDHRTLPTGKVLRLSAP
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctctacccttgctcctgcttgccctggcctctgcccctgccacggggctcgcc
ccgccgtccacggggccttctcccgccaaggcccaggtggtcgcaccgagtggtgcgtca
gcgcgcggggcggagtcatctgctgaggccggtgctgggaatacgcccgctgccgccgcg
gaggctgcacctgaagccgtgaagtcggcaggcgtgtcgcaggctccggcgcctggcgtc
gagcagccgcaggctgttgccgtagagacttcggctgctgttgccagacagcctgctggc
accgtggagacaagtgcggcgaagccgtcgtcggccgccgcgcaaacctcgccagccgat
gcgaagccgtccaccgccgcgcaaacctcgccgaccgctgcgaagccgtccaccgccccc
caggcttctccggccgatgcgaagccgtcgcccgccgccgaggaggccgtcgccgcggcc
cccgaggccgacggcgtcgaggccgcgctggagcccggcaccgccctggtggccgaggac
gccgcggaggaagacgaggccacgcgcgacgcggtcgagtccgagtccgcggagctggaa
gagctccgtgcgctggaaggcgccgcgctggacccggcgtcgcgctccaccgccgaggtg
atgcagtcgctgcggcggctggggctcgccaatccactgcgcatgcgcatgctggacgcc
ctcgacgagcacaccttccgcgaggacgaagagctgccggagattccgctcatcacggac
ctggccaccttcgacgtggcgcagatccaggaccgctacgacatcccggtggagatgcag
ccgctggtggcccagtacatccagttcttccaggggccgggacggcgctggttccgcaag
tggatggcgcgcgcggcccggtacgtgccggtgatgcaccccatcctggagcagtacggc
ctgccgaaggacaccgtgtacctggcgatgattgagagcggcttctccgcgcacgcctat
tcgtgggcgcacgcggccgggccgtggcagttcatctccagcacgggcaagcagtacggg
ctgaagcaggacttctgggtggacgagcgcagggaccccatcaaggccacccacgccgcg
gcgtcctacctcaaggacctcaagcgcgagctgggtcactggtacctggcgtgggctggc
tacaacaccggctccgggcgtgtccggcgcatggtggagcggcacgggacgacggacttc
tgggccctgtcggaggagcgcggactggccaaggagaccaagcactacgtgcccaagctg
attgccgcggccctggtggccaagcacccggcggcgttcggcttcaaggaggaggagttc
gaccccgagcccgtgctcgaattcgacgaggtgcagctcaccgacgcggcggacctggac
gtggtggcgcgcgcggcgggcgtccccgtcaaggcggtgcaggacctcaacccggagctg
aagcgctggtgcaccccgccggcgtcgaccaagaagccctacacgctccggctccccaag
gggacggcgacgctgttcgcggagaactacaagcgcatcagccccgcggagcggctcacg
ttccgcatccacaaggtgaagcgcggcgacacgctgtcgcaaatcgcggagaagtatggc
tcggcgtccgaggccatcctccagatgaaccagctgaagtcggcccacaagttgcgcgtg
ggcggggagctggtgattccgattcccaccgggaagcgcgcgggcagtgcgctggcgacg
aaggtcgcgcaggcccgccgcagtggcgtggtggtccggcccgaggatgaggtaccggcg
ggcacgccccggggccctgtggccgcgggccccgtgaagaaggagaccatcaacgggcgt
acccgcctgacctacggcgtgatgtccggcgacagcctctgggtgattgcgaacaagttc
aacgtgtcggtggactcgctgaagcagtggaacaacctcaagcgtcgcaacccgacgctc
caggtgggctccacgctgttcatctggcccgagggcaacacggccaccgccagcgtgcag
gagcgcggcggaacggtgctggcgaagcacacggtgagcaccaccaagcccgcgggcaac
gccggcaaggtccacgccctggccgagggtgagacgctctggtccgtggcacagcgctac
ggcgtcagcgtggacgacatcatgcggtggaacaagatcaaggaccaccgcaccctcccc
acggggaaggtgctgcgcctcagcgcgccgtag
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