Pseudomyxococcus flavus: VZL07_05605
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Entry
VZL07_05605 CDS
T11142
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03030
DNA replication
pfly03430
Mismatch repair
pfly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VZL07_05605 (dnaE)
03430 Mismatch repair
VZL07_05605 (dnaE)
03440 Homologous recombination
VZL07_05605 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfly03032
]
VZL07_05605 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfly03400
]
VZL07_05605 (dnaE)
Enzymes [BR:
pfly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VZL07_05605 (dnaE)
DNA replication proteins [BR:
pfly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VZL07_05605 (dnaE)
DNA repair and recombination proteins [BR:
pfly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VZL07_05605 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
XSE97391
LinkDB
All DBs
Position
complement(1363688..1367242)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMTSVAVTDHGNMFGAIDFYKKAKDAGIK
PILGMEAYVAGPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHGFYYHPRIDKK
VLAEHSKGLFALTACLGGEITSACFRGDMDHARRAAQEYKDIFEPGHFFLEVQSNGMPEQ
DKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMKHSTDKL
YVTSPTEMLEFFKDTPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPGGHTPDSYMAELAY
EGLRERFKELAATVTYPIDREQYQARLALEIGVIQKMGFSGYFLIVQDFINWAKKMNIPV
GPGRGSGAGSLVAYALRITDLDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDEVIQYV
GRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLNITLKEAIEME
PRLKEMMESPSNIGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGVVIADKPLWEFVPV
YQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHGKDIPRHEIPLD
DQKTWELMAKGDTAGVFQMESSGFTEMVVKLKPSCFEDVIAAGALYRPGPLDSGMVDVFI
NRKHGREKVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRADLLRRAMGKKKA
EVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGLVTIHTAWLKAH
YPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAVNGKIRFGLGAI
KGVGEGAIESILEARKDGPFKSLFDFCERVDSRKVNRKVLEALVKAGAFDFEKRPRRQIF
DTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSSGGSGLQDDYVNVEEWSEKERLALEKE
AIGFYVSGHPLHQYDKELKRYARPITAVQRARKDDKLTVAGIVTILRERPTKTGKRMAWV
TIEDLSGSIELVCFPGKEGTRNVMGKDGKWTKQGPKPGFEHWEHLLKSDDPILVSGTVQI
SQRDEDSPTPELIVDDIQSLKAVREKRTKRLELRVPADLLTEERVAKLHELAQKYAGATP
VAVSVLFKGEGEALIGNTSIKVQVNDDLLLAVDRLFGMRVVEFG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacccacctccacctgcacaccctctactcgctcctcgatggggcgatccgg
atgaaggacctcatcaagacggtgaaggagaaggggatgaccagcgttgccgtgacggac
cacggcaacatgttcggcgccatcgacttctacaagaaggcgaaggacgccggcatcaag
ccgatcctcggcatggaggcctacgtcgccggccccaaggggcgtgaggaccgctccgag
aaggtctcccaccacctcatcctggtggcgaagaacgaggagggctacgccaacctgcgc
tacctgtcctccacggcgtacatgcacgggttctactatcacccgcgcatcgacaagaag
gtgctcgccgagcacagcaagggcctgttcgcgctcaccgcgtgcctgggcggtgaaatc
accagcgcgtgcttccgcggcgacatggaccacgcccgccgcgccgcgcaggagtacaag
gacatcttcgagcccgggcacttcttcctcgaggtgcagtccaacgggatgcccgagcag
gacaaggcgaacgagaacctcaagcagctctcgcgcgacctggacatcccgctgtgcgcc
accgcggacgcgcactacatcaagcgcgaggacgcgcgcgcccacgagctgctcatgtgc
atcgccagcggcaagacgctggcggacggcaagcgcatgaagcactccacggacaagctc
tacgtcaccagccccacggagatgctggagttcttcaaggacacgcccgaggcggtccac
aacacccagcgcatcgccgagcagtgcaacctggagctcaagctgggcaagcccatgctg
cccaccttcaaggtgcccggcggccacacgccggacagctacatggcggagctggcctac
gagggcctgcgcgagcgcttcaaggagctggccgccaccgtcacctatcccatcgaccga
gagcagtaccaggcgcgcctggcgctggagattggcgtcatccagaagatggggttcagc
ggctacttcctcatcgtccaggacttcatcaactgggcgaagaagatgaacatccccgtg
ggccccggccgtggctccggcgccggaagcctggtggcctacgcgctgcgcatcaccgac
ctggaccccatcccgtacaacctcctgttcgagcgcttcctgaatccggagcgcgtgtcg
atgcccgacttcgatatcgacttctgccaggaccgccgggacgaggtcatccagtacgtc
ggccgcaagtacggcgagatgaacgtggggcagatcatcaccttcggctcgctcaaggca
aagagcgtgctgcgcgacgtgtgccgcgtgttcgcgctgcccttcagcgagggtgaccgc
atcgcgaagctggtccccgaggtgctcaacatcaccttgaaggaagccatcgagatggag
ccccgcctcaaggagatgatggagtcgccctccaacatcggcgaggtggagggcaagccc
gtcaccaccaaggacgtgctcgaaatcgcgctcgcgctggagggcctgcaccggcagccc
ggcatgcacgccgccggcgtggtgattgccgacaagcccctgtgggagttcgtgcccgtc
taccagccgccgggtgaaaagacgctcatcacccagttcgccaaggacgaggtggaggcg
gcgggcctggtgaagttcgacttcctcggcctgaagacgctcacggtgattcagcacgcg
ctggacctggtgaagcgcaaccacggcaaggacatcccccggcacgagattccgctcgac
gaccagaagacctgggagctgatggccaagggcgacacggccggcgtcttccagatggag
tccagcggcttcacggaaatggtcgtgaagctcaagccgtcctgcttcgaagacgtcatc
gccgccggcgcgctctaccgcccgggtccgctggactccggcatggtggacgtcttcatc
aaccgcaagcacggccgcgagaaggtgacgtacccgcaccccgcgctggagccggtgctc
aaggacacgtacggcgtcatcgtgtaccaggagcaggtgatgcagatttcgcaggtcctg
ggtggctacaccctgggccgcgcggacctgcttcgccgcgccatgggcaagaagaaggcc
gaggtcatgcaggccgagcgggccggcttcctcgagggctgcgcgaagaacaacgtcgac
ctcaaggtcgccggtgaaatcttcgacctgatggagaagttcgccgagtacggcttcaac
aagagccactcggcggcctacggcctggtcaccatccacacggcgtggctgaaggcgcac
tacccctgcgagttcatggcggcccttctctccagcgagaaggacaacacggacaaggtg
gtgaagcacatcggcgaggcgcgcgagtcgggcctcgaggtgctgccgccggacgtgaac
cagtccgacatggagttcggcgcggtgaacgggaagattcgcttcggcctgggcgccatc
aagggcgtgggcgagggcgccatcgaatccatcctggaggcgcgcaaggacggtcccttc
aagagcctgttcgacttctgcgagcgcgtggacagccgcaaggtgaaccggaaggtgctg
gaagcgctggtgaaggcgggcgccttcgacttcgagaagcgcccacgccggcagattttc
gacaccatcgagaaggcgatgaaccgcggctcggccagccagaaggacaaggccgcgggg
cagagctcgctgttcggcatgctcgccggtccctcctcgagcggcggtagcggtcttcag
gacgactacgtcaacgtggaggaatggtcggagaaggagcggctggcgctggagaaggag
gccattggcttctacgtgtccggccatccgctccaccagtacgacaaggagctgaagcgc
tacgcgcggcccattacggcggtgcagcgcgcgcgcaaggacgacaagctcacggtggcg
ggcatcgtcacgattctgcgcgagcggcccacgaagacgggcaagcgcatggcgtgggtg
accatcgaagacctgtcgggctccatcgagctggtgtgcttcccgggcaaggaaggcacg
cgcaacgtcatgggcaaggacggcaagtggacgaagcagggacccaagccgggcttcgag
cactgggagcacctgctcaagtcggacgaccccatcctggtgtccggcacggtgcagatc
agccagcgcgacgaggacagccccacgccggagctcatcgtcgacgacatccagagcctc
aaggccgtgcgcgagaagcgcaccaagcggctggagctgcgcgtgccggcggacctgctc
acggaggagcgggtggcgaagctgcacgagctggcgcagaagtacgcgggcgccacgccc
gtggccgtgagcgtgctcttcaagggcgagggcgaggcgctcatcggcaatacctccatc
aaggtgcaggtgaatgacgacctgctcctcgcggtggaccgtctgttcggcatgcgcgtg
gtggagttcggctga
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integrated database retrieval system
