Pseudomyxococcus flavus: VZL07_12590
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Entry
VZL07_12590 CDS
T11142
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VZL07_12590 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_12590 (orn)
03009 Ribosome biogenesis [BR:
pfly03009
]
VZL07_12590 (orn)
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VZL07_12590 (orn)
Ribosome biogenesis [BR:
pfly03009
]
Eukaryotic type
Pre-60S particles
RNases
VZL07_12590 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XSE98731
LinkDB
All DBs
Position
complement(3001623..3002174)
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AA seq
183 aa
AA seq
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MISREQRFVWLDLEMTGLDPETCSIIEVGVIITGPDLRPLAEIERVIWQPEEVLLRMEPV
VREMHTRNGLLDKVRASSTSLRVAERDVMALVAEHCALGEGILAGNSIHTDRRFLIRYMP
MLERYLHYRMVDVTSLKVLARAWYPNLVEPRKAPSGHTALADLRASLSELQYYRDTLFRP
TPA
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgcgtgagcagcgcttcgtctggctggacctggagatgaccgggctggacccg
gagacgtgttccatcatcgaggtcggcgtcatcatcaccggcccggacctgcggcccctg
gcggagatcgaacgcgtcatctggcagccggaggaggtgctcctgcgcatggagcccgtc
gtccgggagatgcacacccgcaacgggctcctggacaaggtgcgcgcctccagcacctcg
ctgcgcgtggcggagcgggacgtgatggcgctcgtcgccgagcactgcgcgctgggcgag
ggcatcctcgccggcaactccatccacaccgaccggcgcttcctgattcgctacatgccc
atgctggagcgctacctgcactaccgcatggtggacgtgacgagcctcaaggtgctggcg
cgcgcctggtatccgaacctggtggagccgcgaaaggcgcccagcgggcacacggccctg
gcggacctgcgcgccagcctctcggagctccagtactaccgcgacaccctcttccgcccg
acgccggcctag
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