Pseudomyxococcus flavus: VZL07_15760
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Entry
VZL07_15760 CDS
T11142
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfly Pseudomyxococcus flavus
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfly03016
]
VZL07_15760
Enzymes [BR:
pfly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VZL07_15760
Transfer RNA biogenesis [BR:
pfly03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VZL07_15760
Prokaryotic type
tRNA splicing ligases
VZL07_15760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XSE99347
LinkDB
All DBs
Position
3779318..3780475
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AA seq
385 aa
AA seq
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MTPRVLPPAPGGRPILVWARTLPPGAEKQLRHLAAQPYVVEHVAAMPDFHVASGVAVGTV
FATEHHVVPGALGGDLGCGVSAWRFPLAPRLPGRDKLAQVLSRLADVVPVGDAVHRGRGL
TLPAALASPPLSTRKLVHAWERLAPRHLGTLGGGNHFLELDRDAEGHLWLLLHTGSRGVG
AAIADHHGRVARALGEGSLPALSTHTEEGAACLEDTQWACRFARANRDAIAARALDVLED
ALGVAAEAAPAVDVHHNHVAPEVHGGRALLVHRKGAVGLLAGQRGLIPGSMGTASYVVEG
RGEPRAFGSCSHGAGRVLSRSEARARIRPAALEHALRRVVYDRGRIAALVEEAPAAYRDI
TEVLEDEEDLVRPLVRLTPLAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgacgccccgtgtccttccgcccgcgccggggggcaggcccatcctcgtctgggcccgc
acgctgcctcccggcgcggagaagcagctccgtcacctcgccgcccagccctatgtggtg
gagcacgtggccgccatgccggactttcacgtcgcttccggcgtcgccgtgggcaccgtg
tttgccaccgagcaccacgtcgttcccggcgcgctggggggcgacctgggctgcggcgtg
agcgcctggcgctttccgctcgccccgcggctccccggccgcgacaagctggcgcaggtg
ctgtcgcggctggccgacgtggtgcccgtgggagacgccgtccaccggggcagggggctg
acgctgcccgcggcgctggcgtcgccgcccctgtccacccggaagctggtgcatgcgtgg
gagcggctggcgcccaggcacctggggacgctcggcggcggcaatcacttcctcgagctg
gaccgggacgcggagggccacctctggctgctgctgcacaccggctcgcgaggcgtcggc
gcggccatcgcggaccaccatgggcgcgtggcccgggcgctgggggaaggcagcctgccg
gccctgagcacgcacaccgaggagggcgcggcctgcctcgaggacacgcagtgggcctgc
cgcttcgcccgagcgaaccgggacgccatcgccgcgcgtgcgctggatgtcctggaggac
gccctgggggtggccgccgaggccgcgcccgccgtggatgtgcaccacaaccacgtcgcc
ccggaggtgcacgggggacgcgcgttgctggtgcaccgcaagggcgcggtggggctcctg
gcgggccagcgcgggctcatccccggctccatgggcacggcgtcctacgtcgtggagggc
cggggcgagccgcgggccttcggctcctgctcgcatggggcggggcgcgtcctctctcgc
tcggaggcgcgggcccgcatccgtccggcggcgctggagcacgcgctgcgacgcgtggtg
tatgaccgagggcgcatcgccgcgctggtggaggaggcccccgccgcctaccgcgacatc
accgaggtgctggaggacgaggaggacctcgtccggcccctcgtgcgcctcacgccgctc
gccgtcctgaagggctga
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