Pseudomyxococcus flavus: VZL07_24235
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Entry
VZL07_24235 CDS
T11142
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZL07_24235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_24235
03400 DNA repair and recombination proteins [BR:
pfly03400
]
VZL07_24235
Enzymes [BR:
pfly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VZL07_24235
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VZL07_24235
DNA repair and recombination proteins [BR:
pfly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VZL07_24235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DprA_WH
HTH_15
Motif
Other DBs
NCBI-ProteinID:
XSE93512
LinkDB
All DBs
Position
complement(5810093..5812180)
Genome browser
AA seq
695 aa
AA seq
DB search
MMNMRAMPVDLPYLDEAQQGLERHFGLSQFRPGQDQVISSVLSGRNTLVVMPTGAGKSLC
YQLPATLLPGLTLVVSPLIALMKDQVEQLAARGIPATFINSSLSDLERAERMRRLRAREY
KLLYVAPERFRSMSFLETVSSLGVDLFAVDEAHCISQWGHDFRPDYALLGQVRKRLRPPR
TVALTATATPEVRADIVRVLLMKDPQEFAMGFDRPNLFLGKQEVGGDADRHEACARLAGT
GGSGIVYCSTRRAAEGVFSELHGRGVKAVLYHAGMDDDARRRAQDTFMSAKEAVAVATNA
FGMGIDKPDIRFVAHANIPRAVEAYYQEIGRAGRDGQAARAVLLFNHADVFTQERLIQSS
HPSEAVFGDVWNVLQSVEEFDRGVHALAGTVNASEFEVSAALRILEREGKVERGGRGEGE
HGITLLEKAASAQPHSPDAQRLLKSLLETFPVGRQVTTELPILARRIGLSVDEVRHALGL
LEKAHVAKVRRPFAGRSIRALERVPFRELALDLSRVREQERQNLALLRRMTEYAYTDRDK
KCRRATLLRYFGQRDAGTSCGNCDVCAPEKMPTLLAHGPSASRSRGPSSAAALVVTNYSE
LAATELRRWRKELAKDLGVAPFIIFNDATLLGLSAALPVDREGFLAVKGTGESRWERFGP
KVVEICLMARAAGHEPQAVPEASARARKPTVRRRG
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacatgcgcgcgatgccggtggacctgccctacctcgacgaagcacagcagggg
ctggagcgccacttcggcctgtcccaattccggccggggcaggaccaggtcatctcctcg
gtgttgagcggccgcaacacgctcgtcgtgatgcccactggcgcgggcaagagcctgtgc
taccagctgcccgccacgctgctgccggggctgacgctggtggtgtcgccgctgatcgca
ctgatgaaggaccaggtggagcagctcgccgcgcgcggaattccggccaccttcatcaac
tcgtcgctgtcggacctggagcgcgcggagcggatgcgtcggctgcgcgcgcgggagtac
aagctcctctacgtcgcgcccgagcgcttccgcagcatgagcttcctggagacggtgtct
tccctcggagtggacctgttcgccgtggacgaggcgcactgcatctcccagtggggccac
gacttccggccggactacgcgctgctcggtcaggtgcgcaagcgcctgcgcccgccgcgc
acggtggcgctcaccgccaccgccacaccggaagtccgcgcggacatcgtgcgcgtcctg
ctgatgaaggatccgcaggagttcgccatgggcttcgaccgccccaacctcttcctgggc
aagcaggaggtggggggcgacgcggaccggcacgaggcctgcgcgcggctggcgggcacc
ggaggcagcggcatcgtctactgctccacgcgccgggcggccgaaggcgtcttctcggag
ctgcacgggcgcggcgtgaaggcggtgctgtaccacgcgggcatggacgacgacgcccgg
cgccgcgcccaggacaccttcatgtccgcgaaggaagcggtggcggtggccaccaacgcc
ttcggcatgggcatcgacaagccggacatccgcttcgtcgcccacgccaacatcccccgg
gccgtggaggcgtactaccaggagattggccgcgcgggccgcgacggccaggccgcgcgc
gcggtgctgctcttcaaccacgcggacgtcttcacccaggagcggctcatccagagcagc
cacccgtccgaggccgtgttcggcgacgtgtggaacgtcctccagtccgtggaggagttc
gaccggggcgtgcacgcgctcgcgggcacggtgaacgccagcgagttcgaggtgtccgcg
gccctgcgcatcctcgaacgcgagggcaaggtggagcgcgggggccgcggcgagggcgag
cacggcatcaccctgctagagaaggccgcctcggcgcagccgcactcaccggacgcccag
cggctgctcaagtcgctgctggagacgttccccgtgggccggcaggtgacgacggagctg
cccatcctcgcgcgccgcatcggcctgtccgtggacgaggtgcgccacgcgctgggcctg
ctggagaaggcccatgtggccaaggtgcggcggcccttcgccgggcgctccatccgcgcg
ctggagcgggtgcccttccgcgagctggcactcgacctgagccgcgtgcgagagcaggag
cgacagaacctggccctcctccgccgcatgacggagtacgcctacacggaccgggacaag
aaatgccggcgggccaccctcctccgctacttcggccagcgcgacgcgggcacgtcatgt
ggcaactgcgacgtgtgcgcgccggagaagatgcccacgctgctggcccacgggccgtcc
gcctcgcgctcccgcggcccgtcctcggcggcggcgcttgtggtgacgaactacagcgag
ctggccgccacggagctgcggcgctggcgcaaggagctggcgaaggatttgggcgtggct
cccttcatcatcttcaatgacgccacgctgctgggcctgtccgcggcactgcccgtggac
cgggaaggcttcctcgcggtgaagggcaccggggagagccgctgggagcgcttcggcccc
aaggtggtggaaatctgcctcatggcgcgcgccgcggggcacgagccccaggccgtcccg
gaggcctcggcccgcgcgcgcaagcccaccgtccggcggcggggctga
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