Pseudomyxococcus flavus: VZL07_24820
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Entry
VZL07_24820 CDS
T11142
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pfly Pseudomyxococcus flavus
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfly03016
]
VZL07_24820 (truB)
Enzymes [BR:
pfly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VZL07_24820 (truB)
Transfer RNA biogenesis [BR:
pfly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VZL07_24820 (truB)
Prokaryotic type
VZL07_24820 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
TruB-C_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
XSE93617
LinkDB
All DBs
Position
5926420..5927289
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AA seq
289 aa
AA seq
DB search
MDGVLVIDKPSGPTSFDVVRQVRSLLRLKKVGHTGTLDPLATGVLPLCLGEATKVAGFIT
EGDKAYDATVRLGSETDTLDAEGQVTAQAPVPALTPALIEAALARFRGTYDQVPPMYSAV
KVGGKRLYELARAGEEVERAARQVTVYELVLRDFSADRLQLSVRCSKGFFVRTLAQDVGR
ALGCGAHLEALRRTASGPFSLAQALPLADLPDQVKAGTLASRLVSMSDALVDLPEVRVGA
AEARRVSHGVPVEVPAGRSGRVRVMGPDGALLAVAEVVGGRLRYQRVFV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgtcctcgtcattgacaagccctctggtcccacgtcgttcgacgtggtccgg
caggtgcgctcgctgctccgcctgaagaaggtgggccacaccggcaccctggacccgctg
gccaccggggtgctgccgctctgcctgggagaagccaccaaggtggcgggcttcatcacc
gagggagacaaggcctacgacgccacggtgcgcctgggctcggagacggacacgctggac
gccgaggggcaggtgacggcccaggcgccggtgcccgccctgacgcccgccctcatcgag
gccgcgctggcgcgcttccgcggcacgtacgaccaggttccgcccatgtactcggcggtc
aaggttggcgggaagcggctctacgagctggcccgggcgggtgaggaagtcgagcgagcc
gcccgccaggtcactgtctacgagctcgtcctgcgcgacttctccgcggaccggctgcag
ctgtcggtgcgctgctccaaggggttcttcgtgcgcacgctggcccaggacgtgggccgt
gcactgggctgcggcgcccacctggaggcgctgcggcgcaccgccagtgggcccttctcc
ctggcccaggcgctgccgctggcggacctgccggaccaggtgaaggcgggcacgctggcc
agccggctggtgtccatgtccgacgcgctggtagacctgcccgaggtccgcgtgggcgcg
gccgaggcccggcgcgtgtcccatggcgtcccggtggaggtgcccgcggggcgctccgga
cgggtgcgcgtgatggggcctgatggcgcgctgctggccgtggccgaagtggtgggcggg
cgcctgcgctatcagcgggtgttcgtctga
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