Pseudomyxococcus flavus: VZL07_24830
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Entry
VZL07_24830 CDS
T11142
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZL07_24830 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_24830 (pnp)
03016 Transfer RNA biogenesis [BR:
pfly03016
]
VZL07_24830 (pnp)
Enzymes [BR:
pfly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VZL07_24830 (pnp)
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VZL07_24830 (pnp)
Transfer RNA biogenesis [BR:
pfly03016
]
Prokaryotic type
tRNA degradation factors
VZL07_24830 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
XSE93619
LinkDB
All DBs
Position
5928157..5930328
Genome browser
AA seq
723 aa
AA seq
DB search
MLKKSVKIGESELSIEVGRMAKQADGAVVVRYGDTMLLVTAVSAREKKDVDFLPLTVEYQ
EKLYSAGRIPGSYFKREGRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVISSDPEN
EGDIHGITGASAALWVSDIPFNGPIAGIRVGRVGGQLVANPTAKQREQSDLDLVMAVSRE
AIVMVEGGAEEVSEADMVAALDFGFKTAQPALDLQDELRRELNKQVRAYDKAPAVDEALR
AKVRELVMDGIKAGYAIKEKAARYEALSKAKKDALAKLKEQLGEGFTPLVEKHAKSVVED
LKYEHMREMTVNGGRIGDRGHDVVRPITCEVGVLPRTHGSALFTRGETQALVVTTLGTSD
DEQRLEMLGGMAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMVPKSES
FPYTVRLVSDILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSD
ILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT
LAESRKEISQYAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGASINIEDSGRVDIASA
NGEAVKAAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVK
SVSDVLNEGDEVLVKVVSIDKTGKIRLSRKEAMAERAAQQGAAATEAAAQPAAPAPTQPD
AKA
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaagagcgtcaagattggcgagagcgagctgagcatcgaagtgggccgcatg
gcgaagcaggccgacggtgccgtggtggtccgctatggcgacaccatgctgcttgtgacg
gcggtgagcgcccgggagaagaaggacgtcgacttcctccccctgacggtggagtaccag
gagaagctgtactcggcgggccgcatccccggcagctacttcaagcgcgagggccgcctt
acggagaaggagacgctggccagccgcctggtcgaccgctcctgccgccccctgttcccg
gacggctacgcgtacgagacgcagatcatcgccagcgtcatctcctcggacccggagaac
gagggtgacatccacggcatcaccggcgcctccgcggcgctgtgggtgtcggacatcccg
ttcaacggccccatcgccggtatccgcgtgggccgcgtcggcggccagctggtggccaac
cccaccgcgaagcagcgcgagcagagcgacctggacctggtcatggcggtgagccgcgag
gccatcgtcatggtggaaggtggcgcggaggaggtctccgaggccgacatggtcgcggcg
ctcgacttcggcttcaagacggcgcagcccgcgctggacctccaggacgagctgcggcgc
gagctgaacaagcaggtgcgcgcctacgacaaggccccggcggtggacgaggccctgcgc
gccaaggtgcgcgagctggtcatggacggcatcaaggccggctacgccatcaaggagaag
gccgcccgctacgaggcgctctccaaggcgaagaaggacgcgctcgccaagctcaaggag
cagctgggcgagggcttcaccccgctggtggagaagcacgccaagtcggtggtggaggac
ctgaagtacgagcacatgcgcgagatgacggtcaacggtggccgcatcggcgaccgtggc
cacgacgtggtccgcccgattacgtgcgaggtgggcgtgctcccgcgcacccacggcagc
gcgctcttcacccgcggcgagacgcaggcgctcgtcgtcaccacgctgggcaccagcgat
gacgagcagcgcctggagatgctgggcggcatggcgttcaagcgcttcatgctgcactac
aacttcccgccgttcagcgtgaacgagaccaagccgctgcgtggtccgggccgccgcgaa
gtcggccacggtgcgctggcggagcgcgcgctgcgcaacatggtgccgaagagcgagtcc
ttcccgtacacggtgcgcctggtgtcggacatcctggagtccaacggctcctcgtccatg
gcctccgtctgcggcggcacgctggcgctgatggacgcgggtgttccgctcaaggccccg
gtggccggcatcgccatgggtctggtgaaggagggcgacaagattgccatcctctccgac
atcctcggtgacgaggaccacctgggcgacatggacttcaaggtgtgcggcacctcgaag
ggcatcacgtccatccagatggacatcaagattaccggtctgacgacggaaatcatgagc
cgcgcgctggagcaggcgcgtcagggccgcctccacatcctgggggagatgctcaagacg
ctggccgagtcccgcaaggaaatcagccagtacgcgccgcgcatcaccaccatccagatt
cgtcccgagttcatcaagaacgtcatcgggccgggcggcaaggtcatcaaggacatcatc
gcccgcacgggtgcctcgattaacatcgaggactcgggccgcgtggacatcgccagcgcg
aacggcgaggccgtgaaggccgccatcgcgatgattcaggcgctgacccgcgaggcggag
attgggaagatctacacgggcacggtgcgcaagattgccgagttcggcgccttcgtggag
ctgttcccgggcaccgacggcctcatccacatctccgagctgtccgacaagcgcgtcaag
agcgtgtccgacgtgctgaacgagggtgatgaggtgctggtgaaggtcgtcagcatcgac
aagacgggcaagattcgcctgtcgcgcaaggaggccatggcggagcgcgcggcgcagcag
ggtgccgccgccaccgaggccgccgcgcagcccgcggctccggcgcccacgcagcccgac
gccaaggcctag
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