Pseudomyxococcus flavus: VZL07_27540
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Entry
VZL07_27540 CDS
T11142
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZL07_27540 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_27540 (pcnB)
Enzymes [BR:
pfly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
VZL07_27540 (pcnB)
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VZL07_27540 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
PolyA_pol_arg_C
Motif
Other DBs
NCBI-ProteinID:
XSE94136
LinkDB
All DBs
Position
6563600..6565306
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AA seq
568 aa
AA seq
DB search
MNSQLELSAPSDEDSASKPLAADVQAPEETPTTTAAPAPSEPPAPAHADAELEDDEDDDE
ADAADDGLDDTVLGAEEALAAAEAEDAAEAREEELEEAPTVLEPEPEPTLAERALHAPHV
RPTGEPAEIDPDELDPDALKVVLRLHQHGHQAYLVGGCVRDLLLGRKPKDFDVATSATPN
EVRGIFRNCRLIGRRFRLAHVYFKGGKIIEVSTFRANPTELESHAGGGEDDGDGEDLLIT
HDNVFGTAQEDARRRDFTINGLFYDVSEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDP
VRILRAVRFAAKLGLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLL
DALDALKILLPPVNAYLKQHGKEGEKTFYAFAEALDRRVSAGEPLDDAILLAMLLIPISR
STGPEESQEGGRPSVSQVVEDLLAGFVQSARLPRRIAERCRMLLLAQRTLTGERRRRSAA
FKRHPLFNEALTVFEMTVEATGENREQLEAWKAGEVPQPRAAAADGEAGEAGGQRKRRRR
RRRRRPSANGASGESADASEPSSDAGDA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaactcccaactggagctgtcggcgccctctgacgaggacagcgcctccaagcccctg
gccgccgacgtgcaggcccccgaagaaacccccaccacgactgcagcgcccgccccctcc
gagccgccggcccccgcgcacgcggacgccgagctcgaggacgacgaagacgacgacgag
gccgatgccgccgacgacggcctggacgacaccgtcctgggcgccgaggaggcgctcgcc
gccgccgaggccgaggatgccgcggaggcgcgcgaggaggagctcgaggaggctcccacc
gtcctcgagcccgagccggagcccacgctcgcggagcgcgcgctgcatgcgcctcacgtc
cggcccacgggcgagccggcggagatcgacccggacgagctggacccggacgcgctcaag
gtggtgctgcgcctgcatcagcatggccatcaggcgtacctggtgggcggctgcgtgcgc
gacctgctgctggggcgcaagccgaaggacttcgatgtcgcgaccagcgcgacgcccaac
gaggtgcgcggcatcttccgcaactgccggctcatcggccggcgcttccggctggcgcac
gtctacttcaagggcgggaagatcatcgaggtctccaccttccgcgcgaacccgacggag
ctggagtcccatgcgggtgggggggaggacgacggggacggtgaggacctgctcatcacc
cacgacaacgtcttcggcacggcgcaggaggacgcgcgtcgtcgcgacttcaccatcaac
ggcctgttctacgacgtgagcgagggacgggtcatcgactacgtccgtggtcgccgcgac
ctggacgagcgcttcatccgcaccatcggcgacccggaagtgcgcatgcgcgaggacccg
gtgcgcatcctccgcgccgtgcgcttcgcggccaagctgggcctggacatcgagtcgcgc
acgtacgcggccatggagggcgcggtggaggacctgccgcgctgcgcccccgcgcgcctg
ctggaggagacgttccgcctcatccgcggtggcgtgtccgctccggcgctcaagctgctg
gacgcgctggacgcgctgaaaatcctgctgccgcccgtcaacgcctacctgaagcagcac
ggcaaggaaggggagaagaccttctatgccttcgccgaggcgctggaccggcgcgtgtcc
gcgggggagcccctggacgacgccatcctcctggcgatgttgctcatccccatcagccgc
tcgacggggccggaggaatcccaggagggaggccgcccgtccgtgtcgcaggtggtggag
gacctgctcgcgggcttcgtgcagtccgcgcggctgccgcgccgcatcgcggagcgctgc
cgcatgctgctgctggcccagcgcacgctgacgggcgagcgccgccgtcgcagcgccgcg
ttcaagcgtcacccgctcttcaacgaggccctcaccgtgttcgagatgacggtggaggcg
acgggcgagaatcgcgagcagctggaggcctggaaggccggtgaggtgccgcagcctcgc
gccgccgccgcggacggtgaggcgggcgaggccggtggccagcgcaagcgtcgccgtcgc
cgccgccgtcgtcgcccctccgcgaacggggcttccggcgagagcgccgacgcctccgag
ccgagctccgacgcgggagacgcctga
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