Pseudomyxococcus flavus: VZL07_27880
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Entry
VZL07_27880 CDS
T11142
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VZL07_27880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfly03000
]
VZL07_27880
03400 DNA repair and recombination proteins [BR:
pfly03400
]
VZL07_27880
Enzymes [BR:
pfly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VZL07_27880
Transcription factors [BR:
pfly03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VZL07_27880
DNA repair and recombination proteins [BR:
pfly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VZL07_27880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
XSE94201
LinkDB
All DBs
Position
complement(6651456..6652964)
Genome browser
AA seq
502 aa
AA seq
DB search
MNCLDPAACYRAVQTRDARFDGRFFTAVRTTRIYCRPICPARTPRFENCTFYPSAAGAQE
AGYRPCLRCRPETSPDLAFWRGTSNTVARALALIADGGLDDEGTGVATLADRLGVGDRQL
RRLFQQHLGASPIAVAQTRRVLFARQLLRETSLPMAQVALAAGFRSVRRFNAVFRTLHGR
PPSALRRSRSPAGPSAAGVTLFIPYRPPYDWASMQAHLEARALSGLELVEAGRYRRTVAH
ARGAGVVEVVPAPGRDGLLATLRLPDVQALPSVVAQVRRVFDVGADTEVIGAHLSRDARL
APLVARRPGLRAPGGWDGFELAVRAVLGQQVTVAAARNLGSRLVAEYGEPARPEATGDSR
LTRTFPRPERLAHEDLRRLGMPAARARTLTSLAAAAAADPRLFQPGASLEDTVARFKRIP
GIGDWTAQYIALRAVREPDAFPSADVALLRALTDAQGLRPTPDEVLRQSERWSPWRAYAA
QHLWAADADRASPHPLPPDLSE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcctggaccccgccgcgtgctaccgcgcggtgcagacacgggatgcccgcttc
gacggacggttcttcaccgccgtccgcacgacgcgcatctactgtcggcccatctgcccg
gcccgcacgcctcggttcgagaactgcaccttctacccgagtgccgccggcgcgcaggag
gcaggctaccgaccctgcctgcggtgccgcccggagacctcaccggacctcgccttctgg
cgggggacctccaataccgtcgcccgcgccctggcgctcatcgccgacggcgggctggat
gacgaaggcaccggcgtggcgacgctcgcggacaggctgggcgtgggggaccggcagctg
cggcggctgttccagcagcacctgggcgcctcgcccatcgcggtggcccagacgcggcgc
gtgctgttcgcccggcagctcctccgtgagacctcgctgcccatggcccaggtggcgctc
gccgcggggttccgcagcgtccgccgcttcaacgccgtcttccgcacgctccatgggcgc
ccgcccagcgcgctgcgccggagccggtccccagcgggcccctcggccgcgggcgtcacg
ctcttcattccctaccggcctccctacgattgggcgtcgatgcaggcgcacctggaagcg
cgagccctgtccgggctggagctggtcgaagccgggcgctatcggcgcacggtggcccat
gcccggggcgcgggcgtcgtcgaggtcgtcccggcgccggggcgcgacgggctgctcgcg
acgctccggctccccgacgtccaggcccttccctccgtcgtcgcgcaggtccgccgcgtc
ttcgacgtgggcgcggacacggaggtcattggcgctcacctgtcgagagacgcacgcctg
gcgccgctcgtcgcgcggcggccagggctgagggctccgggcggttgggacggcttcgag
ctcgcggtgcgggccgtgctggggcagcaggtgacggtggccgcggcccggaacctcggg
agccggctggtcgcggagtacggcgagcccgcacgccccgaggccacgggagacagccgg
ctcacccggacctttccccgcccggagcggctcgcgcacgaggacctccgccggctcggg
atgcccgccgcgcgagccaggacgctcacgagcctggccgccgcggccgccgcggacccg
aggctgttccaaccgggcgcctcgctggaggacaccgtggctcgcttcaagcgcatcccc
ggcatcggggattggacggcgcagtacatcgcgctgcgcgccgtgcgagagccggatgcc
tttccctccgcggacgtcgcgttgctgcgcgcgctcacggatgcccagggcctgcggccg
acgccagacgaagtgctccgccagtcagagcgctggagcccgtggcgcgcctacgccgcg
caacacctctgggccgccgatgccgaccgcgcttcaccccaccccctgcccccagacctc
tcggagtga
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