Pseudomyxococcus flavus: VZL07_28900
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Entry
VZL07_28900 CDS
T11142
Name
(GenBank) OB-fold nucleic acid binding domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pfly Pseudomyxococcus flavus
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_28900
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VZL07_28900
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
HD
Trypan_PARP
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XSE94391
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All DBs
Position
complement(6908561..6910003)
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AA seq
480 aa
AA seq
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MTNENVPESASPAAQEGSVETVRKVYAADLREKDRVHTVFRVTKKDKVTARSGKVFVAAT
LVDKSGEVDARIFDKVEALEPAFQAGDFVLVQGNVISFHGRTQVVVESLERLDPEPLDPQ
EFEPPPAPPAEARPAPEARPAPEARPAPEAKAEKAEKGEARGHDGAGGARAAGLIREMVT
ERIGDAFVKQLLIAFLDDPKIAAGLPVAQGARGTHHTWRGGVAEHILSVMRLTLRVADQY
PMVDRDLLLAGALLQQVMKAADANESTDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQH
LTHLVISQHGDAQHGSPKSPVTLEAQILHTLESLDARIASWLEAMQRDSHDRWTDVVRPY
ERQLWKGPSPTSRGRAPVEGGGRRKGREEKRKARAEKAQQGGAPAAEGAPQEQAQRPPRK
ERPPREERPREERPPRPPREERPPRDASSLPKELTFKPFSALTSLSPDSGNAGGEGSSES
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgaaaacgtgcccgagtccgcgtcccccgctgcccaggaaggttccgtggag
accgtccgcaaggtgtacgcggccgacctgcgggagaaggaccgcgtccataccgtcttc
cgtgtcaccaagaaggacaaggtgacggcccgcagcggcaaggtgttcgtcgccgccacg
ctcgtcgacaagagtggcgaggtggacgcgcgcatcttcgacaaggtcgaggcgctcgag
cccgccttccaggccggcgacttcgtgctcgtccagggcaacgtcatctcgttccacggc
cgcacccaggtggtggtggagtcgctggagcgcctggacccggagccgctcgacccccag
gagttcgagccgcccccggccccgcccgccgaggccaggcccgcgcccgaggccaggccg
gccccggaggccaggccggccccggaggccaaggccgagaaggccgagaagggcgaggcc
cgtgggcatgatggcgcgggtggcgcgcgcgccgccggcctcatccgggagatggtcacc
gagcgcatcggcgacgcgttcgtgaagcagctcctgattgccttcctggacgacccgaag
attgccgccggcctgccggtggcccagggcgcccggggcacgcaccacacgtggcgcggc
ggcgtggccgagcacatcctgtcggtgatgcggctgacgctccgcgtggcggaccagtac
cccatggtggaccgcgacctgctgctggccggcgcgctgctgcagcaggtgatgaaggcg
gcggacgccaacgagtccacggacgagggccggctggtgggcaacctggtcctcaccgcg
cagaagctgcgcgagaaggcgctggccatccccggcttcccgccgctcctggagcagcac
ctcacccacctggtcatctcccagcacggcgacgcgcagcacggcagcccgaagtcgccg
gtgacgctggaggcgcaaatcctccacacgctggagtcgctggacgcgcgcatcgcctcg
tggctggaggccatgcagcgcgactcgcacgaccggtggacggacgtggtgcgcccctac
gagcgccagctctggaagggcccctcgcccacctcgcggggccgcgccccggtggagggc
ggtggccgccgcaagggccgcgaggagaagcgcaaggcccgggcggagaaggcgcagcag
ggtggcgccccggccgccgagggcgcgccgcaggagcaggcgcagcgcccgccgcgcaag
gagcgtccgccccgcgaggagcgcccgcgggaggagcgtccgccccggccgccgcgcgag
gagcgcccgccgcgtgacgcgagctcgctgcccaaggagctgaccttcaagcccttcagc
gcgctgacgtcgctgtcgccggattcgggcaacgcgggcggcgagggttcctcggagagc
tga
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