Pseudomyxococcus flavus: VZL07_35980
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Entry
VZL07_35980 CDS
T11142
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfly Pseudomyxococcus flavus
Pathway
pfly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VZL07_35980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfly03019
]
VZL07_35980
Enzymes [BR:
pfly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VZL07_35980
Messenger RNA biogenesis [BR:
pfly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VZL07_35980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XSE95733
LinkDB
All DBs
Position
complement(8726975..8728474)
Genome browser
AA seq
499 aa
AA seq
DB search
MTFDELQLHETLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL
QRLSAKAPPGGARPVRCLVLTPTRELAGQVGDSFATYGKNLPLRHTVIFGGVGQNPQVQA
LQRGVDVLVATPGRLLDLIEQGYVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR
QTLFFSATLPPDIVDLARSILTDPVRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLK
EGNITRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVA
TDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDIE
RTIRRNVPVVEDHPYRSGQPAPRPASHASGAAPEPRPSGNGGRPQGGQRPAGNGGGGHPS
GASRRRRGGRGGGGGGRGQGRPEGSRAAQGGGGSGANRGSPGGSRSQSGGRPSGAVSTSP
AKSPEAPPLPPRRPSPKWF
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgacgaactccagcttcacgaaaccctcctgcgcgccgtcaaggcggagggt
tacaccacgcccacccccatccagcagaaggccattccgcacgcgctggcggggcgggac
gtgctcggcgtggcccagacgggcacgggcaagacggcggccttcgcgctccccatcctc
cagcggctgtccgccaaggcgcccccgggcggtgcccgtccggtgcgctgcctggttctg
acgcctacccgcgagctcgcgggccaggtgggggacagcttcgcgacctatggaaagaac
ctgccgctgcgccacaccgtcatcttcggcggcgtggggcagaatccgcaggtccaggcg
ctgcagcgcggcgtggacgtgctggtggcgacgccgggccggctgctcgatttgatagag
cagggctacgtgtcgctgcgctcgctcgaggtgttcgtgctcgacgaggccgaccgcatg
ctcgacatgggcttcatccatgacgtgcggcgggtcatcaaggcgctgccgcccaagcgg
cagacgctgttcttcagcgccacgctgcctccggacatcgtcgacctggcgcgcagcatc
ctcacggaccccgtccgcgtggaggtgacgcccgcctccagcaccgcggagacggtgagc
cagcaggtgtacttcgtggagcgcgagcagaagcgcggcctgctgacgcacctgctgaag
gaaggcaacatcacccgcgcgctcgtcttcacccgcaccaagcacggcgcgaaccgcgtg
gcgaagcagctcgagggcgccggcgtcagctcggcggccatccacggcaacaagagccag
aatgcccgcgagcgcgcgctcgacgagttccggtccgggacgctccgcgtgctggtggcc
acggacatcgccgcgcgcggcatcgacatcgacgggctgagctacgtcgtcaactacgac
ctgcccaacgtgcccgagcagtacgtgcaccgcatcggccgcacgggtcgcgcgggcgcc
agcggcaccgccgtgtccttctgtgacgccgaggagcgcgcgtacctgcgtgacatcgag
cgcaccatccgccgcaacgtgccggtggtggaggaccacccgtaccgctcgggtcagccc
gcgccgcggccggcgagccatgcctccggcgctgctccagagccccgtccttcgggcaat
ggtggccgtccgcagggcgggcagcgtcccgccggcaacggtggcggcgggcatccttcg
ggggcgtctcgtcggcgccggggcggccgcggtggtggcggtggcggccggggccagggc
cgtcccgagggcagccgcgccgcacagggcggaggtggctcgggcgccaaccggggcagc
ccgggcggttcgcggagccagagtggcggccgtccctcgggcgcggtgagcacgtctccg
gcgaagtcgccggaggccccgccgctgcctccgcggcgtccgtcgcccaagtggttctga
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