Pyrolobus fumarii: Pyrfu_0129
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Entry
Pyrfu_0129 CDS
T01620
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pfm
Pyrolobus fumarii
Brite
KEGG Orthology (KO) [BR:
pfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfm03016
]
Pyrfu_0129
Enzymes [BR:
pfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Pyrfu_0129
Transfer RNA biogenesis [BR:
pfm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Pyrfu_0129
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AEM38001
UniProt:
G0EEG0
LinkDB
All DBs
Position
complement(116696..117283)
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AA seq
195 aa
AA seq
DB search
MASRWDKIRAFIAVDIDDPQVVSRLVQIRDLFVNTGTPMKPVEDYNMHITLRFLGEIPST
LIEDIYANVLSKLRFRRFRIRLVGVGAFPSITRPRVIWVGVREGSDELQRLYREIESGLR
RMGFRPEREEFVPHVTLARIKGSRNIERVVKLLQEYADVELGEFEVRVVRLKQSILTPRG
PIYKTLKEVTAVEGE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacgatgggacaagatacgtgctttcattgcagtcgatattgatgatcctcag
gtggtctctaggctcgtacagatacgtgatctcttcgtgaatactggcacgccgatgaaa
cccgtagaggattacaatatgcatataactttaaggttccttggtgaaatcccgtcaacg
ttaatcgaggacatctatgcgaatgtgttgtcaaagttgcgttttcgtagattccggatt
aggctggtgggagttggtgcatttcccagcataacgagaccgcgtgttatctgggtaggt
gtgagggaaggtagtgatgaattgcaaaggttgtatcgtgaaatagagagtggtcttagg
agaatggggtttaggccggaaagggaagagtttgttcctcacgtgacgcttgcaaggata
aaaggtagtaggaatatagaacgcgtggtgaaattgctacaagaatatgctgatgtagag
cttggcgagtttgaggttagggttgtgaggttgaagcagagtattctaacacctcgggga
ccaatatacaaaacgttgaaagaggttacagctgtggagggcgaatag
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