Pyrolobus fumarii: Pyrfu_1301
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Entry
Pyrfu_1301 CDS
T01620
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfm
Pyrolobus fumarii
Brite
KEGG Orthology (KO) [BR:
pfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfm03016
]
Pyrfu_1301
Enzymes [BR:
pfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pyrfu_1301
Transfer RNA biogenesis [BR:
pfm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pyrfu_1301
Prokaryotic type
tRNA splicing ligases
Pyrfu_1301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEM39160
UniProt:
G0EGD5
LinkDB
All DBs
Position
1205698..1207176
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AA seq
492 aa
AA seq
DB search
MCTGLTGASSMAVKLQRVSEYEWVIPKGAKPCMRVPAVIFADEYLLKKMQQDLTLEQAAN
VACLPGIQVASYVMPDGHQGYGFPIGGVAGMAIDEDGVISPGGVGYDINCGVRLLRTNLD
YNEVKPKLKELIQELYRNVPSGLGKSGKIHLSIQELNKVLDEGVMWAVQRGYGWADDPEH
IEERGSWTLADSSKVSQRAKQRGAPQLGTLGSGNHFLEVQVVDEIYDPQIAKVLGIERVG
QVMVMIHTGSRGLGHQVASDYLMIMERAMRKYGIRPPDRELASVPFSSREAQDYLRAMAA
AANYAWTNRQLITHWVRESFRRVLHVDPDKLDLHIIYDVAHNIAKIEEHEVDGKRMKLVV
HRKGATRAFPPGHPEIPKDHREIGQVVLIPGSMGTPSFVMVGIPEGKRTWYSAPHGSGRW
MSREAAVRTYRPAEVVEQLARQGIVVMAANRRVIAEEAPGAYKPSERVVRVAHAVKIAKL
VVKLRPIGVVKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcacgggtttaacgggtgcttcttcaatggctgttaagctccagagggttagcgag
tacgaatgggtcatacccaaaggcgcaaagccgtgcatgagagtaccggctgtgatcttt
gccgacgaatacctcctcaagaagatgcagcaggatctaaccctagagcaagcggctaac
gtggcctgcctccccggcatacaagtagccagttacgtgatgccggacggccaccagggt
tatggcttccccattggcggcgtggcaggcatggcgattgacgaggatggcgttatcagc
ccgggtggcgtcggctacgatatcaactgtggtgtaaggcttctccgtacaaacctcgac
tacaacgaggttaagccgaaactcaaggagctcatccaggagctgtacaggaacgtgcct
agcggcctaggcaagagcggcaagatacacttgagcatccaggagcttaacaaggtgctc
gacgagggcgtaatgtgggctgtacagcgcggctacggctgggctgacgacccggagcac
atcgaggagcgaggcagctggacactagcagactcctcgaaggtaagccagagggccaag
cagcgtggagccccccagctaggcacccttggcagcggcaaccacttcctagaagtgcag
gttgttgacgagatatacgacccacagattgccaaggtacttggcatagagcgtgtaggc
caagttatggtcatgatacacactggtagccgtggtctaggccaccaagttgcaagcgac
tacctcatgataatggagagggctatgaggaagtatggcatccgcccaccagaccgcgag
ctagccagcgtcccattctctagcagggaggcccaagactaccttagggcgatggctgcc
gccgccaactacgcatggaccaacaggcagctaatcacgcactgggtgcgcgagagcttc
cgcagagtgctacacgttgatcccgacaagctagacctacacatcatatatgatgtggcc
cacaacatcgcaaagatagaggagcacgaggtcgacgggaagaggatgaagctggtcgta
cacaggaagggcgcgaccagagcattcccaccaggccatccagagatacccaaggatcac
agggagattggccaggtggtcctcataccaggtagcatgggcacaccgagcttcgtgatg
gtcggcatcccggagggtaagaggacctggtactctgctccacacggctctggccgctgg
atgagccgcgaagcggcagtcagaacctacaggccagctgaggttgtcgagcagctagcc
aggcagggtatagtggttatggccgctaacaggagggtcatcgcagaggaggctcctggc
gcctacaagccaagcgagcgtgtggttcgcgtcgcacacgctgtcaagattgctaagctc
gttgtcaagctacgcccgattggtgtagtcaagggctaa
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