Pyrolobus fumarii: Pyrfu_1605
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Entry
Pyrfu_1605 CDS
T01620
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
pfm
Pyrolobus fumarii
Brite
KEGG Orthology (KO) [BR:
pfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfm03016
]
Pyrfu_1605
Enzymes [BR:
pfm01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Pyrfu_1605
Transfer RNA biogenesis [BR:
pfm03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Pyrfu_1605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
TSEN34_N
Motif
Other DBs
NCBI-ProteinID:
AEM39462
UniProt:
G0EC92
LinkDB
All DBs
Position
complement(1495781..1496362)
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AA seq
193 aa
AA seq
DB search
MIEDTLLRSQKRVYRGTLLGSRVVIFDLDDARSLYAEGFYGKPIGISKPKGPSFDSPLEL
DLIEAVYLVRRGLLVVEDSEGRVLTPDELESIAARFVPRFHLLYRVYSELRDAGYVVRSG
LKFGTDFAVYVHGPGIDHAPFLVSVVEYHNTIDPLEIVRAGRLSHSVRKHFVIAAVNVKT
GSVTYLGFSWVKL
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
gtgattgaggacacgctactcagatcgcagaagagagtttaccgaggcacccttctaggc
tcgcgtgtcgtgatattcgatttagatgatgctaggagtttgtacgcggagggcttctac
ggcaagcccataggcatatccaaacctaaagggccgtcattcgactccccgcttgagctt
gacctgatagaggctgtgtacctcgttaggaggggtttgcttgtagtcgaggatagtgaa
ggtcgtgttttaacaccggatgaactcgagagcatcgcagccaggtttgtaccgcgcttc
cacctcctctatagagtgtatagcgagctgcgcgatgctgggtatgttgttaggtcgggt
ttgaaatttggcacagactttgctgtttacgtgcacggccctgggatagatcatgcacct
ttcctggtatctgtcgtagagtatcacaatactatagacccgctagagattgttagagct
ggcaggttaagccacagtgtaagaaaacattttgtaatagcggctgtgaacgtcaagaca
ggtagcgtgacctacctgggcttcagttgggttaagttgtga
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