KEGG   Pyrolobus fumarii: Pyrfu_1637
Entry
Pyrfu_1637        CDS       T01620                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pfm  Pyrolobus fumarii
Brite
KEGG Orthology (KO) [BR:pfm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfm03400]
    Pyrfu_1637
Enzymes [BR:pfm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Pyrfu_1637
    5.6.2.6  RNA 3'-5' helicase
     Pyrfu_1637
DNA repair and recombination proteins [BR:pfm03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Pyrfu_1637
SSDB
Motif
Pfam: DEAD DEAD_assoc Helicase_C WHD_Lhr ResIII Cas3-like_C_2 Zn_ribbon_8 HHH_5 AAA_22 HHH DUF4379 DEXQc_Suv3 HypA DUF7836 AAA_25 Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: AEM39494
UniProt: G0ECC4
LinkDB
Position
1530434..1533262
AA seq 942 aa
MGDTKGCPSGAFALLHPRLKEALVKHGYCEPTPVQERAIPVLLRGVNALVMAPTGSGKTE
AALLPLASRVMGRGGDGIKILYVTPLRSLNRDIFLRIVKLLETAGLRVFVRHGDSTSSER
RLFLQEPFDVVIITPETLEYLLSSSKRFREYLASLQAVIIDEVHELLDSKRGAELSVVLE
RLERISRFRVQRVGLSATVGDPMLAARFVAGVGRYVEIIEDPSAKRYEIIVETVKPGSSD
NLEAVRLGVEPDTVARLRRIVEYSERYRHVLVFTNTRDTAEMLSKLLSLLVGDDKVRVHH
GSLSREERLEAEKLFREGKLPILVATSSLELGIDIGHVEFVVQYLSPRQASKLVQRVGRS
GHRLGRVSRGVVLTLSNFYDVLESMVLAARGMRGDIEEPRPYEKPLDVLVHEIAGMVDER
GSITIDEVYDIVTRSWPFRDLTWDELLEVIGLMESARILRRDGNVLRPGRRLKSYHYSVT
MIPDVKQYVVIEQGSGRRVGVLDEVFVADLSPGKQFVLAGKIWEVLDIGESRVLVRKVDE
GSLVLPAWEGDLIPVEWKAAREAGALLRRLANNDSGLHDSYPATSSSWVLLESVVREHKS
RGYPVPSDRLVLVEVYRDILALLGFFGTRLAKTLEFLVSTLVAEMVGYTPRSASNAYAVV
LQLNSQPSPLLVETLTKLLKRISLDEAKVLVERAAKRSNLFMWKLYHVAVRMGLVEKGAK
PERRLLESLADTLAGVEALRELEHDKLDFEALERLLKDIRDGRVRLKIVYSVEPSPLLQH
AISVASSGDRVRDSTIPSSVLASVLRKRLDEKKVRLVCLRCGEVFEERIGSLDEKPKCPK
CNAGFIAPTSLSSGEARRLVDAARKGVRLKGEDAKRLRELREAADLVLTFGKYALYALSV
RGVGPKTARRVLSQLAYGEEAFFKALVEAEQRYLKTRRYWRG
NT seq 2829 nt   +upstreamnt  +downstreamnt
gtgggagataccaagggctgtcctagtggagcctttgctctccttcatcccaggttaaag
gaagccctagtgaagcatgggtattgtgaacctacgccagtgcaagaaagagccattcca
gtattgttaaggggtgttaacgccttagtcatggcgccaacaggatcggggaagactgag
gcggcactgttaccattagcttcccgtgttatggggaggggtggcgacggtatcaagata
ctctatgttactcctttgcgtagccttaaccgtgacatattcctgcgtatagtgaagttg
ttggagacagctggtcttcgggtgtttgtcaggcacggggactccacgagtagtgaaagg
aggctattcttgcaggagccgtttgacgtggtcataataacgcctgagacgctagagtat
ctgctatcctcgtcaaagcggttccgagaatatctggcgagcttgcaagcggtgatcata
gacgaggttcatgaactactcgatagcaagaggggtgctgagcttagcgtagtcttagag
aggttggagaggatctcgaggtttcgggttcagagggttgggttgtcggcaactgtaggc
gatcccatgttggcagctaggtttgtggctggtgtgggacggtatgtggagataattgag
gacccgtctgctaagaggtatgagattatcgttgagactgtaaaaccgggttcaagtgat
aatcttgaggctgttagactgggggtcgagccggacactgttgctaggttgcgaaggata
gtagagtatagtgagcgttatcggcacgtcctggtgttcactaatactcgtgatacggca
gagatgttgtctaaactgttatcgttgcttgtcggcgatgataaggtgcgtgtgcaccat
ggtagtctgagtagagaggagagacttgaggcggagaaactcttccgtgagggtaagctg
ccgatccttgttgcgacctcgagcctcgagcttggcatagacatcggtcatgtcgagttt
gtagtccagtatctatctccgaggcaagcgtcgaagcttgtgcaaagggttggtcgtagt
ggtcataggcttggtagagtatcgagaggcgtagtgctgacgctgtccaacttctacgat
gtgctagagtcgatggtgcttgccgctcgtggtatgaggggtgatattgaggagcccaga
ccctacgagaagcctctagacgtgctcgtgcacgaaatagccggtatggttgacgagagg
ggctctattacgatagacgaggtttacgatatagttactcgttcgtggcccttccgtgac
cttacgtgggacgagcttctcgaggttatcgggttaatggaatctgcgaggatattgcga
agagatgggaatgttctgcgcccaggtaggaggctcaaaagctaccattacagtgttacg
atgatacctgacgtcaagcagtatgtggttatcgagcagggtagtgggcggcgtgtaggc
gtgctagatgaggtgtttgttgccgacttgtcgcctggaaagcagtttgtccttgctggc
aagatatgggaggttctcgatataggcgagtctagagtgctggtgaggaaggttgacgag
ggtagccttgtcctcccagcctgggagggcgacctaatacccgtagagtggaaagcggca
cgcgaagctggagcattgctcagacggcttgcgaacaacgatagcggattacacgactcc
tatcccgctacgagtagctcttgggtattgttggagagtgttgtccgagagcacaagtct
aggggttacccggtgcctagcgataggctagttcttgtcgaggtttatcgggacatactt
gcgctcctaggattctttggtactaggcttgcaaagacactggagttcctagtctcgaca
ctcgtagctgagatggtgggatacacgcctagaagcgcaagtaacgcgtatgcggtcgtg
ttgcagcttaactcgcagcctagccccctcctcgtagagacacttacaaagctgctaaaa
cgtatatctctagacgaggctaaggtgctcgttgagcgggccgctaaacgctctaacctc
ttcatgtggaagctgtaccatgtagctgtgcgtatggggctagtcgagaagggagccaag
ccagaaaggaggcttctagagtctctcgcggatacactagcgggtgtagaggcgctacgc
gaactcgagcatgataagctagactttgaggctctcgaaagactgcttaaggatatcaga
gacgggcgcgtgcgattgaagatagtctactctgttgagccgagccctctgctccagcat
gcaatcagtgtggcttcgtcgggcgaccgtgtcagagattctacaataccatcctctgtt
cttgccagtgtgttgaggaagaggcttgacgagaagaaggtgagactagtgtgtctgcgt
tgcggggaggtgtttgaggagagaataggtagtcttgacgagaagccaaaatgcccgaaa
tgtaatgcaggcttcatcgctccaaccagtttatcgtcgggagaggctcgtaggctggta
gatgctgcgaggaagggtgttaggctgaaaggcgaggatgctaagaggcttcgagagctg
cgtgaggcggcggacctagtgctaacctttggcaagtatgcgctatacgcactgtctgtt
aggggtgtggggcctaagaccgctaggagggttctatcgcagctagcttatggcgaggaa
gctttcttcaaggcgcttgtggaggctgagcaaaggtacctgaaaacaaggaggtattgg
agagggtga

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