Pyrolobus fumarii: Pyrfu_1946
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Entry
Pyrfu_1946 CDS
T01620
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfm
Pyrolobus fumarii
Brite
KEGG Orthology (KO) [BR:
pfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfm03032
]
Pyrfu_1946
03400 DNA repair and recombination proteins [BR:
pfm03400
]
Pyrfu_1946
Enzymes [BR:
pfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pyrfu_1946
DNA replication proteins [BR:
pfm03032
]
Prokaryotic type
DNA Topoisomerases
Pyrfu_1946
DNA repair and recombination proteins [BR:
pfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pyrfu_1946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Motif
Other DBs
NCBI-ProteinID:
AEM39799
UniProt:
G0EDJ5
LinkDB
All DBs
Position
complement(1811686..1813716)
Genome browser
AA seq
676 aa
AA seq
DB search
MVAGGCRPPRGYGLIIAEKPKAAAKIAEALGGRYARRCTAYGVPYWVLRVDGRLFVVAPA
AGHLYGLYTDERGFPVFTYRWVPLDVAEGAKHARKFLALLATLCRDASIYINACDYDVEG
SVIGYMIIRNLGDVRRAYRMKFSALTPTDIRRAFRRLEPLDWPMIEAGLARHELDWLWGI
NVSRALMEAVKLVTGKKVVLSAGRVQSPTLVEAAKREARRRLHVPYPRFNVQVWLAGREG
RLKLTIASREKLIEAKRIADRVAARGYAFVSSVAGRREYVKPPPAFNLSDLQMEAARLYG
YSPAFTQEIAEQLYLDGLISYPRTNSQKLPHTLDFRGILEGLASIPAYTQLVKRLLLETR
GVLRPVQGPKEDPAHPAIHPTGAVPRRKLNRAEERIYDLIVRRFLAAFSKPAVVERVTAT
LDFGVVRVNVSGTRVLEEGWYVYYPFSRPKDDIPRVSRGERLRVERVVVETVYTEPPEAY
TKAKLVRWMEEVGIGTEATRARIVETLFDRGYLRLSGGYVTVTDLGFAVAEVLEKFFPKL
TSVAMTREFERLLEDIRRGIRRRAEVVEEAKRVLSLLLEDYKKRAMRDAGLMLAKSLRLV
EAERPCVICGRESVDGRLCRFHLEALEALKRGFVEWRRRLGGIGWEEYLERVASLRETGM
WVRDVAKYLLETGLAP
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtggctggtggctgcaggccgccgcgaggctatggactaataatagctgagaagccg
aaagcggctgcaaagattgcagaggctcttggaggccgatatgcgaggagatgtacggca
tatggcgtaccatactgggtgctcagagttgatgggcgcttgttcgtagttgcgccggct
gctggccacctctacggcctttataccgacgagcgtgggtttcccgtgttcacataccgt
tgggtccccctagacgtggctgagggcgccaagcatgctaggaagttcctcgcgctgcta
gccaccctgtgtagagacgctagcatctacataaacgcgtgtgactatgacgtagagggc
tcagtcatagggtacatgatcatacggaacctgggtgatgtgcggagagcctaccgcatg
aaattctctgctctgacgccaactgatatacgccgtgcattccgcagactggagccgcta
gactggccgatgatagaggcgggtctagctcgtcacgagctagactggctctggggtatc
aacgtcagcagggcgttgatggaggctgtgaagctcgtcaccggcaaaaaggttgtgctg
agcgcgggtagagtgcagtcgccgacgctggtagaggctgctaaacgtgaggctaggaga
aggcttcacgtcccatatccgcgctttaacgtgcaagtatggcttgctggtcgtgagggc
aggctgaagctgactatagcttcgcgtgagaagcttatcgaggccaagcgtatagcggat
agggtagctgcgcgtggctatgctttcgtctctagtgttgcaggtagacgtgagtatgtg
aaacccccgccagcgttcaacctaagcgacctccagatggaggcagctcggctctacggg
tacagcccggcctttacacaggagatagccgagcagctatacctcgacggtctcataagc
taccctagaacgaatagccagaagttgcctcacaccctagacttccgaggcatacttgaa
ggcttagcatctatcccggcctacacgcagctagtcaagaggctgctgctcgaaacgcgt
ggtgtgctgaggccagtgcagggacccaaggaggatccagcgcatcctgctatacacccg
acgggggctgttcctaggcggaagttaaaccgtgcagaagagcgcatctatgatctcata
gtgcgtaggttcttggctgctttctccaaaccggctgttgttgagagagtgactgcaaca
ctagactttggcgtagttagggttaacgtgtcggggacacgtgtcctcgaagaagggtgg
tatgtctactacccgttctctcgcccaaaggatgatataccgagggtgtcccggggggag
aggctccgagtcgagagggtggtagtggagacggtttacactgagcccccggaggcctac
acaaaggcgaagctagtaaggtggatggaggaggttgggattggtactgaagccacgcgc
gcaaggattgtagagacgctcttcgaccgtgggtatctgcggctgagcggaggttatgta
acagtcactgacctgggattcgctgttgccgaggtgcttgagaagttcttcccaaagctg
accagcgtggctatgacgagagagtttgagaggctactggaggatataagacgcggaatc
aggagacgcgctgaggtggtcgaggaggctaagcgtgtgcttagcctgctcctagaggac
tacaagaagcgtgctatgagggatgctggcctcatgttggctaagagtctacgtttggtc
gaggctgagaggccgtgtgttatatgtggaagggagagtgttgatgggagactctgcagg
tttcatcttgaggcgttagaggcgcttaagaggggatttgttgagtggaggaggcgtcta
ggagggataggctgggaggagtatcttgagcgtgtagcatccctacgcgagacaggcatg
tgggtacgtgatgttgccaagtacctgcttgagactgggttagctccttag
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