Pseudomonas fluorescens UK4: HZ99_08140
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Entry
HZ99_08140 CDS
T03319
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfn
Pseudomonas fluorescens UK4
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfn03032
]
HZ99_08140
03400 DNA repair and recombination proteins [BR:
pfn03400
]
HZ99_08140
Enzymes [BR:
pfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HZ99_08140
DNA replication proteins [BR:
pfn03032
]
Prokaryotic type
DNA Topoisomerases
HZ99_08140
DNA repair and recombination proteins [BR:
pfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HZ99_08140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AIG02123
UniProt:
A0A379IGN8
LinkDB
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Position
complement(1830715..1833336)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWSKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPENGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgctgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctctcgcccaaggagaaagcgcgcaagcaattggtcgctcgcatgggtgtg
gacccggatcatggctggaaggccaagtatgaaatccttccgggcaaggaaaaggtcatc
gaggagctgcgccggctcgccaaggatgctgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggtggggatgacagccgc
tataaacgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctccaag
ccgggcgaactggacattgaccgcgtcaatgcccagcaggctcgccgcttccttgaccgc
gtcgttggttacatggtctcgccgctgctgtggtcgaagatcgcccgtggcctgtccgct
ggccgtgtgcagtcggttgcggtaaagctggtggtggagcgtgagcgcgagatccgtgcg
ttcatccctgaagaatactgggaagtccatgctgaccttggcaccgccaaaggcgctacg
gtgcgctttgacgtggcccgcgagaaaggcgaggccttcaagccgctcaacgaaacccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgtcaagcgcgaagac
aagcccaccagcagcaagccgtccgcgccattcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggctttggggtgaagaagacgatgatgatggcccagcgactgtacgaa
gcgggctacatcacctatatgcgtaccgactccaccaacctgtcgcaagatgcggtagcg
atggcacgcacctatattgaaagcgagttcggcaagaagtacctgccggagaagccaaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccctccgatgcc
aataccgagccaagcaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcttgccagatgttgccggcgcaatatttgtccaccaccgtc
accgtgggtgccggggacttcgagctgcgtgccaaggggcgtatcctcaagtttgacggc
tacacccgcgtgatgccgcaaattgccaagcctggcgacgatgacgtgctgccggacatg
gcccagggcgatgtgatgaagctgatcaagcttgatccgtcccagcatttcacaaagccg
cctgcgcgttattcggaagccagcctggtcaaggagatggaaaagcgtggcattggtcgc
ccttcgacctacgcggcgatcatttccactatccaggaccgaggctacgtagcgctgcat
aaccgtcgtttctattcggaaaagatgggcgatatcgttaccgagcgtctgtccgagagc
ttctccaacctgatggactatggctttaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtgctcgacgagttctatggcgatttcaagaaa
aaactcgaagtagccgagagcccggaaaacggcatgcgcgccaaccagccggtgatgacg
gatattccgtgcaccacctgtggtcggccgatgcagatccgcaccgcgtccaccggtgtg
ttcctggggtgctcgggctatagtctgccgcccaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgctgccgacgacgagggtgagtctgagtcgctggtgctg
cgtggcaaacaccgttgcccgatctgcagcacggccatggatgcctacctgctggacgag
aagcacaagctgcatatctgcggtaacaaccctgattgcaatggctacgagatcgaagaa
ggtacctaccgcatcaagggctatgagggtccgagcctggaatgcgacaagtgcggcagc
gagatgcaactcaagaccggccgtttcggtaagttcttcggttgtaccaacccgacctgc
aaaaacacccgcaaactgctgaaaagcggtgatgcggcaccgccgaagatggacccggtg
aagatgcccgagctcaagtgcgagaaggtcaacgacacctatatcctgcgtgatggtgct
tcgggcctgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcgccactg
gtgatggagatcgtgccacacaaggacgaaatcgatccgaagtaccacttcctgtgcgaa
gcgccgaagaaggatcccgacggtcgcccggccgtgatccgttacagccgcaagaccaag
gagcagtacgtgcaaaccgaagtggacggcaagcctacgggctggaaggccttctatgac
ggtggcaagtggaaggtcgaggataagcgccagggcgcttga
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