Pseudomonas fluorescens UK4: HZ99_15550
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Entry
HZ99_15550 CDS
T03319
Name
(GenBank) RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pfn
Pseudomonas fluorescens UK4
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfn03009
]
HZ99_15550
Enzymes [BR:
pfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HZ99_15550
Ribosome biogenesis [BR:
pfn03009
]
Prokaryotic type
rRNA helicases
HZ99_15550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIG03505
UniProt:
A0A379ILW4
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All DBs
Position
3398784..3400169
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AA seq
461 aa
AA seq
DB search
MTTIATAFNTLPLSAAMLANLDSLGYAEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIA
SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPAR
RQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHSDEQIEQRFYEISPDERMDAVTKVLS
HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE
LLQKAPLNWDQLSNLKSQGGAPLLPVMSTLCIAAGRKDKVRPGDILGALTGEAGIPGTQV
GKIAIFDFQAYVAVERSVAKQALQRLNDGKIKGRSLRVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccatcgccaccgcttttaatactttgccgctctccgccgccatgctggctaac
ctcgactcgctgggttatgccgagatgacgcagatccaggcgcaaagcttgccggtgatc
ctcaaggggctggacctgattgcccaggccaagactggcagcggcaagactgccgccttc
ggcatcggcctgttgaacccgatcaacccgcgctatttcggttgccaggccctggtgatg
tgcccgacccgcgagctggctgaccaggtggccaaggaaattcgccgcctggcccgtgcc
gaagacaacatcaaggtgctgaccctgtgcggcggcgtgtccctcggcccgcagatcgct
tccctggagcatggcgcccacgtcatcgtcggcaccccgggccgcatccagcaacacctg
cgcaagggctcgctggtgctggacggcttgaacacattgatcctcgacgaagccgaccgc
atgctcgacatgggcttctacgacgccatcgaagacatcatcagcaagaccccggcccgt
cgccagaccctgctgttctcggccacctacccggtgagcatcaagcaactggcctcgaaa
ttcatgcgcgcgccgcagcaggtcaaggccgaagcgttccactccgatgagcagatcgag
cagcgtttctacgaaatctccccggacgagcgcatggacgcagtgaccaaggtgctgtcg
cactttcgcccggcctcgtgcgtagcgttttgctttaccaagcagcaagtgcaggaaacc
gtggaccacctgaccgccaagggtatttctgcggtcggcctgcatggcgacctggaacag
cgcgaccgtgaccaagtgctggccatgttcgccaaccgcagtacttcggtgctggtagcc
actgacgttgcggcccgtggcctggacatcgactcgctggacatggtgatcaacgtcgaa
ctggcacgcgactcggaaatccacattcaccgtgtaggccgtaccggtcgcgccggtgag
accgggatcgccatcagcctggtagcgccgtccgaagcgcaccgcgcccaggccatcgag
ctgctgcaaaaagccccgctgaactgggaccaactgagcaacctcaagtcccagggcggc
gcgccgctgctgccggtgatgagtacgttgtgcattgctgccggccgtaaagacaaggtt
cgccctggcgacatcctcggcgcactgaccggtgaagccgggatcccgggcacccaggtg
ggcaagattgcgatcttcgacttccaggcctatgtggcggtggaacgcagcgtcgccaag
caggcgttgcagcgcttgaacgatggcaagatcaagggccgttcgttgcgcgtgcggatc
ctgtaa
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