Pseudomonas fluorescens UK4: HZ99_15720
Help
Entry
HZ99_15720 CDS
T03319
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZ99_15720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfn03019
]
HZ99_15720
Enzymes [BR:
pfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZ99_15720
Messenger RNA biogenesis [BR:
pfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZ99_15720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIG03537
UniProt:
A0A379IKT9
LinkDB
All DBs
Position
3433472..3435349
Genome browser
AA seq
625 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG
GRRDKGKDKGGKDKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD
DVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRTGGQPQGRQNGPRSSNGATTGTPP
AKRNGPRNGAPRDGQARREESRNRRPARDEQPRASEPAVQNPRSGTTPKIIHKESKSDRF
PTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggctcagacaggtactggtaaaaccggcggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcctgaccccaacccgcgaactcgccgcacaagtgcatgacagcttcaag
ttgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgcggggtagacgtgctggtcgcctgcccgggtcgcctg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgcacgc
ctgccggccaagcgtcagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgcccaacaccacg
gtcgagcgtatcgagcaacgagtgttccgcctgccagccagccacaaacgctcgctgttg
gcccacctgatcaccgccggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgccatccac
ggcaacaagagccagaacgcacggaccaaggccctggccgacttcaaggccggcaccgta
cggatcctggtcgccaccgatatcgccgcccgcggcctggatatcgaccaactgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggccatttccctggttgccccggatgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccgtggaagccgaaaagccggaagtgcgtgaacgtccggacgtgcgtaac
ccgcgcaacccacggggtccgaagggcgatggcccgaacggcggcggcggtggtggcggt
ggtcgtcgcgacaaaggcaaggacaagggcggcaaggacaaggcgccgaccaacggccgt
ggcgaacgcccagcccgtgagcaaaagccccgcgaaggcaccccggcccgcgaacagcgc
cagccgagccagccgccacgcgccgctgctgaccgcgcaccggacgagttcctcgacgat
gacgtggataacttcggtaaccgcgtagactacgtgccccaggccaaaccggcccagggc
cgtggtcgtcgccctggtgcccctgcccagggcgcaggcgctccgcgcaccggcggccag
ccacagggtcgccagaacggtccgcgcagcagcaacggcgccaccacgggcaccccaccg
gccaagcgcaatggtccgcgtaacggcgctccacgtgatggccaggcccgtcgcgaagag
tcgcgcaaccgccgccctgcgcgtgacgagcagccccgcgcctccgagcctgccgtgcag
aacccgcgcagcggcacgacgccgaagatcatccacaaggagtcgaaaagcgatcgcttc
ccgacacctgagcagttggaccaactgccaggccgccctcgtggtgagaaacctgcgttg
ctgacccgcaaccgctag
DBGET
integrated database retrieval system
