Pseudomonas fluorescens UK4: HZ99_17280
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Entry
HZ99_17280 CDS
T03319
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03420
Nucleotide excision repair
pfn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HZ99_17280 (uvrD)
03430 Mismatch repair
HZ99_17280 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfn03400
]
HZ99_17280 (uvrD)
Enzymes [BR:
pfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HZ99_17280 (uvrD)
DNA repair and recombination proteins [BR:
pfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZ99_17280 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HZ99_17280 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_22
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AIG03841
UniProt:
A0A379ILX0
LinkDB
All DBs
Position
3761989..3764172
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLAQTFQILDSDD
QQRLVKRVIRELGLDEQRWPVRQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE
VACQRAGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIYQYSDDFPDAETIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSDVSMWEAMRLLIVNKGLTGRAAGALGGFVELIDTLAAKCLEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENSEEDAELSPLAAFLGHA
SLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
QQNSSNLFAGSEIPETPFSLGQQVRHAIFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLEAV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctcttttgctgaactccctcaacgatgcccaacgccaggccgta
gcagcccccgttggccgtcagttggtcctggccggtgctggctccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgaaaacgcgtccccgcattccatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgccaccgcatcgagcagttgatg
ggcatcagcccggccgggatgtgggttggcaccttccacggcctggcgcaccgcttgttg
cgggcgcactggcaggaggcgggcctggcccagaccttccagattctcgacagcgatgac
cagcaacgcctggtcaagcgagtgatccgcgagctgggcctggatgagcaacgctggccg
gtgcgccaggcccagtggtttatcaacggccagaaagacgaaggcctgcgcccgcaacat
atccaggccagtggcgacctgttcctggccaccatgcgcagcatttatgaagcctatgaa
gtggcctgccagcgtgcgggggtcatcgacttctccgaactgctgctgcgggccctcgat
ctgtggcgcgacaaccccggcttgctggcccattaccagaagcgcttccggcacatcctg
gtggatgagttccaggacaccaacgccgtgcagtacgcctggctgcgcttgctggccaag
ggcggcgacagcctgatggtcgtgggcgacgatgatcagtcgatctacggttggcgcggc
gcgaaaatcgagaacatctaccagtattccgacgacttccccgacgccgagaccattcgc
ctggagcagaactatcgctccaccgccgggatcctcaaggccgccaacgccttgatcgcc
aataacaccgggcgcctgggcaaggagttgtggaccgacggcggcgaaggcgaggcgatc
aacctctacgccgctttcaacgagcacgacgaagcccgctacgtggtggaaaccattgaa
agtgccctgaaaaccgggctggcccgtagcgatatcgccattttgtatcgctccaacgcc
cagtcgcgggtgctcgaagaggccttgctgcgtgagcgcatcccctaccgcatctacggc
ggccagcgcttcttcgagcgcgcagaaatcaagaacgccatggcctacctgcgcctgctg
gaagggcgtggcaacgatgcggcgctggagcgggtgatcaacgtgccagcacgggggatt
ggcgagaaaaccgtcgaggcgatccgcgagcacgcacggcacagcgatgtgtcgatgtgg
gaggccatgcgcctgctgatcgtcaataaaggcctgacaggtcgcgctgccggggctttg
ggcgggtttgtcgagttgatcgacaccctcgccgccaagtgcctggaaatgccgctgcac
ctgatgacccagaccgtgatcgaacagtccggcctgatcgcttatcacgaagcggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgcccgcgct
ttcgagaacagcgaggaggatgccgagctgtcgccgctggctgcgttcctcggccatgcg
tccctggaagccggcgatacccaggccgacgaacacgaggacagcgtgcagctgatgacg
ctgcacagtgccaagggcctggaattcccctacgtgttcctggtgggcatggaagaaggg
ttgttcccgcacaagatgagcctggaagaacctggccgccttgaagaagaacgccgcctg
gcctacgtgggcatcacccgggcgatgcagaacctggtgatgacctacgccgagacacgt
cgcctgtatggcagcgagacttacaacaaggtgtcgcggttcgtgcgggaagtgccgaaa
gggctgattcaggaagtgcgcttgtccaatagcgtcagccggccgtttggcggaggccag
cagcagaactccagcaacctgtttgccggctcggaaattcccgagaccccgttcagtctc
ggccagcaggtcaggcatgcgatctttggcgagggggtgatcctcaacttcgaaggcgcc
ggggcccaggcccgggtgcaggtgaacttcgccgagggcagcaaatggctgatgatgggt
tacgccaagctcgaagcggtgtaa
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