Pseudomonas fluorescens UK4: HZ99_21430
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Entry
HZ99_21430 CDS
T03319
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HZ99_21430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfn03400
]
HZ99_21430
Enzymes [BR:
pfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HZ99_21430
DNA repair and recombination proteins [BR:
pfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HZ99_21430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AIG04625
UniProt:
A0A379I6Y0
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All DBs
Position
4709923..4713372
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AA seq
1149 aa
AA seq
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MPDATSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPVKSLLDKAPLTWRLMRLLPEL
IDQPHFEPLQRFLTDDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGE
AKPLSPANCWQAELWRALLLDVGEEGMAQSRAGVHQRFIERINNLDTAPQGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKTGMPVTI
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDSEPTTILNQL
QDDILELRPLPETRERWPAVDLQHDTSIRFHIAHSAQREVEILHDQLLQRFSENPALRPR
DVIVMVPDVDSYAPHIRAVFGQLDKKDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRERFAIQERDLPTLHRWIEGAGIRWGLDAEQRAGLGLPSALEQNS
WRFGLRRMLLGYAVGSGAACAGIEPYDEIGGLDAALIGPLVALLDALHAAHQTLSQPAPP
HAWGARLQELMQRFFLPSNEHDDYLLGQLEQLREDWLETCESVGLYDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWQYAQ
EPPLLEAMTQEHPLQPFSARYFHEGDPLFSYAREWQLLHEAQDPPREATCLAPYVQEEPL
SLGQLQDFLRNPVRHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYTLSDSLLSAALADP
DHLEQALEAQAQRLQGSGLLPMVGFGECLRNELIEPLPDLLQRYQQLLALWPTPHNTAEP
VSFAHQGIQLDGWISGLHRRSDGGLLSVSTIPNSIGSIKTRKWHRLIRPWVNHLVACACG
LPLSTGLVASDDTLLLAPLEQNLAQNVLGNLLLAWKAGMGEPLPIAVKTAFAWLGQTDPD
KAQAAALKAYEGDGINSDGERRESPALTRQFPDYAALVASEEFEGWCETLYRPLITAPWR
SLTSEEARP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccggatgcaacgtctctcagcgctggatttatggtcgtccatggcaatcgcctggat
gaactgcgcagcctggtcgtcagttggatgcgtcgttatccactggctcccctggaaaac
gaaatcgccctggtgcaaagcaacggcatcgcgcaatggctcaaactggcgcttgctgaa
gatccggaggacgacgacatgggtggttgcggcattgccgctgcaatcgacgtgcaactg
cccggtagcttcatgtggcagctctatcgcatggtgctgggccgcgacgaaatcccagtc
aaatccctgttggacaaggccccactgacctggcgcctaatgcgcctgttgcctgagctg
atcgaccagccacacttcgagcccctgcaacgcttcctcaccgatgacaccgacctgcgt
aaacgctaccaactggcggagcgcctggccgacttgttcgaccaatatcaggtctaccgt
gcggattggctggaagactgggccgctggccgccaccaactgcgcaacggccgaggcgaa
gccaagcccctgagtccggccaactgctggcaggccgagttgtggcgtgcattgctgctg
gatgtcggcgaggagggcatggcgcagagccgtgccggagtccaccaacgctttatcgag
cgcatcaataacctggatacggccccgcagggcctgccgtcccgagtcatcgtgtttggc
atttcttccttgcccgcccaggctcttgaagcactggccggcctggctcgtttcagccag
gtattgctctgcgtgcataacccttgccgtcaccattggtctgacatcgttgccgacaaa
gacctactcagaaacgaatacaagcgccaggcgcgcaagaccgggatgcctgtcaccatc
gacccgcaaaccttgcatcagcacgcccaccccttgctcgccgcctggggcaagcaaggt
cgcgactacatcaacctgctggacagctacgacgatcccaacagctatcgttcagcattt
cgcgacgggcgcatcgacctgttcagcgacagtgagcccaccacaatcctcaaccagcta
caggacgatatcctcgaactgcggccgcttcctgaaacccgcgagcgttggcctgcggtc
gatctgcagcacgacacctcgatccgtttccacattgcccacagtgcccagcgcgaagtg
gaaatcctccacgaccaattgctccaacgcttcagcgaaaaccccgcattgcggcctcgc
gacgttatcgtcatggtcccggacgtcgacagctatgcaccgcatatccgcgcggtcttc
gggcagctggataaaaaggacccgcgcttcatccccttcaccctgactgaccagggccaa
cggggacgcgatccattgctgatcgccgtcgaacatctgctgaaactcccagacagccgt
ttcccggtcagcgaaatcctcgacttgctggacgttcccgcgctgcgcgaacgcttcgcc
atccaggagcgcgacctgcccaccctgcaccgttggatagaaggcgccggcatccgctgg
ggcctcgacgccgagcagcgtgccggccttggcctgcccagtgcgctggaacagaacagc
tggcgttttggcctgcgtcgcatgctgctgggctatgccgttggcagcggtgccgcctgc
gcaggcattgaaccctatgacgaaattggcgggctcgacgctgcgctgatcggtccattg
gtcgccttgcttgacgcactgcatgctgcacaccaaaccctgtcacaacccgcgcccccg
cacgcctggggcgcacgcctgcaagagctgatgcagcgcttcttcctgcccagtaatgaa
cacgatgactatctgctgggccagcttgagcaactgcgggaagactggctggaaacctgc
gagtctgttggcctgtacgacgaattaccgctgactgtagttcgtgaggcctggcttgcc
ggcctcgaccagggccgcctgtctcagcgcttcctcgccggcgctgtgaatttctgcacc
ctgatgccgatgcgcgccattccgttcaagctggtatgcctgctgggcatgaatgatggc
gactaccctcgcgcccagccgccactggatttcgaccttatgggcagcgactaccgcccc
ggcgaccgctcccgccgcgaagacgaccgctacctgttgcttgaagcgctgctctcggca
cgcgaccagctctatatcagttgggttggccgcagcatccgcgataacagcgagcgcccg
gcatccgtgttgatcggccagttgcgcgaccacctcgccagcggctggcagtatgcccag
gaaccaccactgctggaggcaatgacccaggaacacccattgcagcccttcagtgcgcgc
tatttccacgagggcgatccgttgttcagctacgcccgcgaatggcagctgttacacgaa
gcccaagacccgcctcgcgaagcaacgtgcctggcgccttacgtccaggaagagcctctg
agcctggggcagttgcaggacttcctgcgcaatcccgtcaggcatttcttcagccaacgc
ctgaaggtatttttcgaagccgccgaagtgcctctggccgatgaagagcccttcgtcctc
gacgccttgcagcgctacaccttgagcgacagcctgctcagcgccgcgctggccgacccg
gatcatctggagcaagccctggaggctcaggcacaacgtcttcaaggcagtggcctgctg
cccatggtcggtttcggcgagtgcctgcgcaacgaactgatcgaacccttgcctgacttg
ctgcaacgctaccagcaactcctggcactctggccgacgccacacaacaccgcagaacct
gtcagctttgcgcaccagggtatccagctcgacggctggatcagcggcttgcaccgccgc
agtgatggcggcttgctcagcgtgagcaccatccccaacagcatcgggtcgatcaagacc
cgcaaatggcatcgcctgatccgcccatgggtcaatcatctggtggcttgcgcctgcggc
ttgcccctgagtaccggtttggtcgcgagcgatgacacactcttgctggcgccgctggag
caaaaccttgcccagaatgtgcttggcaatctgctgctggcttggaaagcaggtatgggc
gaaccgctgccgattgcagtcaagaccgccttcgcctggctcggccaaaccgatccggac
aaagcccaggccgccgcccttaaagcctacgaaggcgatggcatcaacagcgacggcgag
cgccgcgaaagcccggccctcacccgacagttccccgactacgcggccctggttgccagc
gaagagttcgaaggctggtgcgaaaccctgtatcgccccttgataaccgccccctggcga
tcactgaccagcgaggaggcccgcccatga
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