Pseudomonas fluorescens UK4: HZ99_21435
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Entry
HZ99_21435 CDS
T03319
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HZ99_21435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfn03400
]
HZ99_21435
Enzymes [BR:
pfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HZ99_21435
DNA repair and recombination proteins [BR:
pfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HZ99_21435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Viral_helicase1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AIG04626
UniProt:
A0A379I7B5
LinkDB
All DBs
Position
4713369..4717049
Genome browser
AA seq
1226 aa
AA seq
DB search
MSAIKPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAQAARFFRDEIEQPDALIAELRDQYGAEQWQGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHGD
ALNWVRSHWGGPAALMPRVRALFGSERPSGEPREPAELIEACLHERREALVALKAPWLHW
AAELREICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGM
AEAWKGDAPHHPGLEAMAGLKASLDALPTPDAAVLQHAAAWVGKRFEEEKRRRAEMGFDD
MLIRLDAALQTEGGERLASVIREQFPVALIDEFQDTDPVQYRIFESIYRIEENNLHSGLF
LIGDPKQAIYAFRGADIYTYLRARQATTGRLHTLGTNFRSSHAMVEAVNHVFERAETGRG
AFLFREPDGKNPVPFQPVSSQGRKEQLQVDGHTLPALNIWHLPTDQPISNVLYRQQLAGA
CASQIVALLNGGQQGTAGFIQKAHFAAVKPSNIAILVRDGKEAQSVRSELAARGVRSVYL
SDKDSVFASQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELEQLNQDELTWEQR
VMQFRDYRVIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLCELLQQAAAEL
DGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAK
PVDGSRLPLHYHDANGKSQVSLKPTVELIAQADDERLAEDLRLFYVALTRARHACWLGVA
DLKRGTTNSSVLHLSALGYLLGGGAALGESAGLARWLMDLQDGCAAIACGQMPQADTRTY
QPPRNDATLLAPLLPKRKAAENWWIASYSALRIGESMSAASLEAPESPQAQKLFDDERLD
PDAPREVAVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFNVTPQAIEDAVARRCNRRGWE
GWIGTLSGWLGHLLQAPLALGHGQAAVTLAGLRHYQIEMEFWFASHKVDVLALDQLVCQY
THAGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGADDAAYTREAMEQSML
DHRYDLQYVLYLLALHRQLKARLLDYDYDRHVGGALYLFLRGSQAVSQGTYFTRPPRVLI
ERLDLLFQGKPQPPKVEPAWEQGTLL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccatcaaaccactggccctggctttccccttgcgcggcagccaactgatcgaa
gccagcgccggcaccggcaagaccttcaccatttctgcgctgtacctgcgcctggtgcta
ggccacggcggcgacgaggcgggttttggccgcgaattgctgccgccgcaaatcctggtg
gtgacctttaccgatgcggccaccaaagagctgcgcgaacgcatccgcacccggctggca
caagcggcgcgcttctttcgtgatgaaatcgaacagcccgatgccttgatcgccgagttg
cgtgatcaatacggtgccgagcagtggcaaggttgtgccaaccgcctcgatatcgctgcg
caatggatggacgaggccgccgtctcgaccatccacagttggtgccagcgcatgctgcgc
gaacatgccttcgacagtggcagcctgtttacccagaccctggaaaccgaccacagcgac
ctgctcggcgaagtgctgcgcgactactggcggctgttctgctacccgatgcacggtgat
gccctgaactgggtccgcagccattggggcggccctgcggcgttgatgcccagggtgcgc
gcgctgttcggcagtgagcgccccagtggcgaacctcgcgagcccgccgaactgattgaa
gcctgcctgcatgaacgccgtgaggccctggtggcgctcaaggctccttggctgcactgg
gccgccgagttgcgcgaaatctgcctgcaagccgtcgccgccaaggctgtcgatgggcgc
aagatgcaggcccgctatttcgagccctggttcgaaaaaatcagcgcctgggccgccgac
gaaaccctggaacaattggatatcggcaccggcttcacccgcctgacgcccgatggcatg
gccgaagcctggaaaggcgatgcgccccatcatccgggcctggaggccatggcgggcctc
aaggccagcctcgacgccttgcccacgcccgacgctgcggtgttacagcacgcggccgcc
tgggtcggtaaacgttttgaagaggagaagcgccggcgtgccgagatggggtttgacgac
atgctcatccgcctggacgccgccctgcaaaccgagggtggcgagcgcctggccagcgtg
atccgcgagcaattcccggtagccctgatcgacgaattccaggacaccgacccggtgcag
taccggattttcgaaagtatctaccgcatcgaagagaacaacctgcacagcggtctgttc
ctgatcggtgaccccaaacaggcgatctacgcctttcgcggcgccgatatctacacctac
ctgcgcgctcgccaggcgacgaccggacgcttgcacaccctgggcaccaactttcgctcc
agccatgccatggtcgaggcggtcaaccatgtgttcgagcgtgcggaaaccgggcgtggg
gcgtttctgtttcgcgagccagacggcaagaacccggtgccattccaaccggtgtcatcc
cagggccgcaaggagcaattgcaggtcgatggccacacactgccagccctgaacatctgg
cacctgcccaccgaccagccgatttccaatgtgctctatcgccaacaactggccggtgcg
tgtgccagccagatcgtcgcgttgctcaatggcggccagcagggcactgccgggtttatc
cagaaggcgcacttcgccgcagtgaaaccgtcgaacatcgccatcctggtgcgtgatggc
aaggaagcccagtcggtacgcagcgaactggccgcgcgcggtgtacgcagtgtgtacctg
tccgataaggattcggtgtttgcttcccaggaagcccacgacctgctcgcctggctcaag
gcctgtgccgaaccggatgtggagcgcccgctgcgtgcggccctggcctgcgtcaccctc
aacctgtcgctggcggaactggagcaattgaaccaggacgaactgacctgggagcagcgc
gtcatgcagtttcgcgattaccgcgtgatctggcgtacccagggcgtgttgccgatgctg
cggcgcctgctgcatgactttaagttgccgcaaaccctgattgcccgcagcgatggcgaa
cgggtgctgaccaacctgttgcatctgtgcgagctactgcaacaggccgccgcagaactg
gacggtgagcaagccttgatccgtcatctggccgaacacctggcactctcgggccaggcc
ggtgaagagcagatcctgcgcctggaaagcgatgagcaactggtcaaggtggtgaccatc
cacaagtccaagggcctggagtacgacctggtgttcctgccgttcatctgttcggccaag
ccggtcgacggcagccgcctgcccctgcattaccacgatgccaatggcaagtcccaggtc
agcctgaaacccaccgtcgaactgatcgcccaggctgatgacgaacgcctggccgaagac
ctgcgcttgttctatgtggccctgacccgggccaggcatgcctgctggcttggcgtggcc
gacctcaagcgcggcactaccaacagttcggtgctgcacctgtcggcgctgggctatctg
ttggggggcggcgcggccctgggcgaatccgccgggctggcccgctggctgatggatctg
caggacggctgcgcggcgatcgcctgcgggcaaatgccgcaagccgacacccgcacctac
cagccaccgcgcaatgacgcgaccttgctcgcgccgctgctgcctaagcgcaaggcggcg
gaaaactggtggattgcctcctacagcgccctgcgcatcggcgaaagtatgagcgctgcc
agcctggaggccccggaaagcccgcaagcgcagaagctcttcgacgacgaacgcctggac
ccggatgcaccacgggaagtcgccgtatccggcggcgacatccatcgtttcccacggggc
cccaaccccgggacctttctccacggcctgctggagtgggccggcaacgaaggcttcaac
gtaacgccgcaagccatcgaagatgcggtcgcaaggcgctgcaaccggcgtggctgggaa
ggctggatcggcactctcagcggttggctcgggcacctgttgcaagcgccgctggcgctg
ggccatggccaggcagcggtgaccctggcgggcttgcgacactatcagatcgaaatggag
ttctggttcgccagtcacaaagtcgatgtactcgccctcgaccaactggtctgccaatac
acccacgccggcgtgtcgcgggtggctgccgagccggtattgctcaacggcatgttcaaa
ggctttatcgacctgaccttcgaacatgacggccgctactatgtggccgactacaaatcc
aactggctcggcgccgacgatgcggcctacacccgcgaagccatggagcagtcgatgctc
gaccatcgctatgacctgcaatatgtcctctacctactggccctgcatcgccaactcaag
gcgcgcctgctcgactacgattacgaccggcatgtgggcggcgcgctctacctgttcctg
cgcggcagccaggccgtgagccagggtacgtatttcacccggccgccacgtgtactgatc
gaacgcctggacctgttgttccaaggcaagccacaaccgcccaaggtcgaaccggcctgg
gaacaaggaaccctgctatga
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