Pseudomonas fluorescens UK4: HZ99_22275
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Entry
HZ99_22275 CDS
T03319
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZ99_22275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfn03019
]
HZ99_22275
03016 Transfer RNA biogenesis [BR:
pfn03016
]
HZ99_22275
Enzymes [BR:
pfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HZ99_22275
Messenger RNA biogenesis [BR:
pfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HZ99_22275
Transfer RNA biogenesis [BR:
pfn03016
]
Prokaryotic type
tRNA degradation factors
HZ99_22275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AIG04770
UniProt:
A0A379I8L1
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All DBs
Position
4875000..4877105
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVLST
SKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRSEFGAQISDAYTITIKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaggcctccggcgcagtgctggtcaccgttgacgacgacgtcagcgta
ttggtgaccgttgttggtgccaagaccgctgacccaagcaaaggcttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgaaaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggtcgtctgcaccgttctgtccacc
agcaagaaaaccgatccggacgtcgctgcgatgatcggtacttcggctgccctggccatc
tccggcattccgttcgatggcccgatcggcgcagctcgcgttgctttccacgaaagcacg
ggctacctgctgaacccgacttacgagcaactgaaagcatcgagcctggacatggtcgtt
gccggtacctcggaagctgtgttgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggtgccgtactgtttgctcacgacgagttccaggttgtgatcaacgctgtt
aaagagctggctgccgaagctgccaagccgacctggacctgggctcctcagccagaagcc
accgcactgctgggtgctatccgctccgagttcggcgcacagatctccgacgcctacacc
atcaccatcaaggccgaccgttatgctcgcctgggtgagctgaaggaccaggttgttgcc
aagctgtccggtgaagagggccagccttcttccagcgaagtcaaagccgcattcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtattgacggtcgc
gacactcgcaccgtacgtccactgaacattgaagtcggcgtcctgccgaagacccacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtagtcgcgaccctgggcactgcc
cgtgacgcgcagctgctggacaccctggaaggcgagaaaaaagaccccttcatgctgcac
tacaacttcccgccgttctcggtgggcgagtgtggtcgcatgggcggtgctggtcgtcgt
gaaatcggtcacggccgcctggctcgtcgttcggtccaggccatgctgcctgctgctgac
gtgttcccgtacaccatccgtgttgtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtctgcggtgcttccctggcgctgatggacgctggcgtgccgatgaaggcg
ccggttgccggtatcgccatgggcttggttaaagaaggcgagaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcccgcactgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggcggcgcgaccatccgtgcgatc
tgtgaagaaaccaaggcctcgatcgatatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcggcacgccagcgcgtcctgggcatcaccgcagaagcc
gagattggcaagatctacgtcggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggatggcctggttcacatctccatgctgagcgatgctcgtgta
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtagcagcagccaaggcttcgggc
gtttaa
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