Pseudomonas fluorescens UK4: HZ99_24220
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Entry
HZ99_24220 CDS
T03319
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03030
DNA replication
pfn03430
Mismatch repair
pfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZ99_24220
03430 Mismatch repair
HZ99_24220
03440 Homologous recombination
HZ99_24220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfn03032
]
HZ99_24220
03400 DNA repair and recombination proteins [BR:
pfn03400
]
HZ99_24220
Enzymes [BR:
pfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HZ99_24220
DNA replication proteins [BR:
pfn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HZ99_24220
DNA repair and recombination proteins [BR:
pfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HZ99_24220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AIG05130
UniProt:
A0A379I9F3
LinkDB
All DBs
Position
5291471..5294992
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKSTMGAG
IKPICGADLWLSNKDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AQASEGLIMLSAAKEGEIGIALLGGNPHEAQVLASEWMKVFPDRFYLEIQRTNRPNDEEH
LHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLVVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYA
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQEGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccactggtcaaaaccctggtgggcatgaatatgcctgccgttgcggtg
accgatcagaacaacatgtgctccctggtcaagttctataagagcaccatgggcgccggt
atcaagccgatctgcggcgccgacttgtggctgtccaacaaggatccggataacgccttg
agccgtatcagcctgttggcgatgaacggtgtgggctatcgcaacctgaccgaattgatt
tcccgtggttttatcgacggccagcgcaatggctcgatcatcatcgagcgcgaatgggtg
gcgcaggccagcgaagggttgatcatgttatcggccgccaaagagggcgagatcggtatc
gcgttactgggcggcaacccgcatgaggcccaagtgctggccagtgagtggatgaaggtc
tttcccgaccgcttttacctggaaatccagcgtaccaatcgccccaacgacgaagagcat
ctgcacgccgccgtggccctggccgaaaagctgggcgcgccactggtagccaccaacgat
gtacgttttataaagaaggaagatttcgaggctcacgaaacccgcgtgtgcatcggcgaa
ggccgggcgctggacgatccgcggcgctcgaagaactacagcgaagagcaatacctcaaa
agtgccgaggaaatggctgagctgttcagcgacttgcctgaggcgctggaaaactccgtc
gaaattgccaagcgctgcaatatcgaagtgaagctgggcaaacacttcttgcccaacttc
ccgattcccgatggcatgaccatcgatgaatattttcgcaaggtgtccttcgatggcctg
gaggagcgtcttgttgtcctgctgcccaaggacaccaccgaagactacgacgccaagcgc
caagtgtatgtcgaccggctgaatttcgagctggatatcattatccagatgggcttcccc
ggttacttcctgatcgtaatggattttatccagtgggccaaaagcaacggcgtgccggta
gggcctggccgggggtcgggtgctggctcgctggtggcttatgtacagaagatcaccgac
cttgacccgctggaatatgacctgctgttcgagcggttcctgaaccccgagcgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggtgatcgagtatgtg
gccgagaaatatggccgtaacgcggtaagccagatcattacctttggttccatggcggcc
aaggcggtaattcgcgacgtggcgcgggtgcagggcaagtcctacggcctggcggatcga
ctgtcgaagatgattcccttcgaagtcggcatgaccctggaaaaagcctacgagcaagaa
gaaatcctgcgtgacttcatcaaggtcgatgaagaagccgccgaaatctgggacatggcc
cgcaaacttgaaggcgtggtgcgtaacgtcggtaagcacgccggtggcgtggtaatcgct
ccgaccaagctgacagacttttcgccgatctactgcgacgaagaaggcgatggcctggta
acccagttcgacaaggatgacgtggaagcagccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcgattgggcgctcaagaccatcaaccgcgaccgcgccaag
gtgggcgaagaaccgctggatatcgcgtttatcccgctggacgacaagccgacctacgcc
ctgctgcaaaaggccgaaaccaccgcggtattccaacttgaatcgcgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcattggtggccctgttc
cgtccgggcccactgcaatcgggcatggttgacgactttatcaaccgtaagcacgggcgc
gccgagctggcttacccgcactccgattaccagtacgaaggcctcaagccggtactggcg
ccgacctacggcatcattctgtatcaagagcaggtgatgcagattgcccaggtcatggcc
ggctataccctaggtggcgcggacatgctccgtcgagccatgggtaagaaaaagccagag
gaaatggccaagcagcgcggtggtttcattgaaggttgcgccaccaacaatatcgacgcc
gacctggccggtaacatctttgacctggtggaaaaattcgccggttacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagaccgcctggctgaaggcccactat
ccggcgccgttcatggcggcggtgctttcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagctgcgccttgacgcgccggacgtgaacgcc
tcggaattcaaattcaccgtgaacgacgaaggccgcatcatttacggcctgggtgcgatc
aagggggtgggcgaaggcccggttgaggcgatcaccgaggcgcgccaggaggggccgttc
aaggatctgttcgacttctgcgcccgggtcgacctcaagcgcatcaacaaacgtaccctg
gatggcctgatccgcagcggcgcacttgaccgtctcggcccgtactttcatgacgagccg
aaggcttaccaggccaatatcgaccgtaaccgcgcggtgctgctggccgccatggaagaa
gcgatcaaggccgccgagcagaccgcccgcacccacgacagcgggcatgccgacctgttt
ggcgggctgttcgtcgaagaagacgccgatgtatacgccaaccaccgcaaggccaaggaa
ctgaccctcaaggaacgtctcaagggtgaaaaagacaccctgggcctgtacctcaccggg
catccgattgatgaatatgaaggcgagatccgccgtttcgcccgccagcgcatcatcgac
ctgaaaccggcacgcgatacccagacggtcgccgggatgatcattgccctgcgggtaatg
aagaacaaaaagggcgacaagatgggtttcatcaccctcgacgaccgctccgggcgtatc
gaagcgtcactgtttgccgacgccttccattctgcgcagtcgctgttgcagaccgatgcg
atggtggtggtggagggggaggtgagcaacgatgacttctccggcggcctgcgcctgcgg
atcaaacgcgtaatgagcatggaagatgcccgcaccaacctggccgaaagcctgcgcctg
aaggtgaaaaccgaagcgctcaagggcgatcagctacgctggttgggggatttgctcaag
cgtcaccgtggcgcgtgcccggtgaccatggagtacaccggcagcgatgccaaggcgatg
ttgcagttcggtgagacgtggcgaattgacccggccgatggcttgattcaagcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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