Pseudomonas fluorescens UK4: HZ99_25430
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Entry
HZ99_25430 CDS
T03319
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pfn
Pseudomonas fluorescens UK4
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfn03009
]
HZ99_25430
Enzymes [BR:
pfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZ99_25430
Ribosome biogenesis [BR:
pfn03009
]
Prokaryotic type
rRNA helicases
HZ99_25430
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AIG05364
UniProt:
A0A379IAJ1
LinkDB
All DBs
Position
5542957..5544303
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AA seq
448 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECVNRQQTM
LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNSTTRQQIITADHNVHKEQILNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYSGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKSPTKRKIANR
PKTDNLSLVSKDGMAPLKRRKPEAPAGE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagcctacgcctgtgcaagcagcggccatcccgctcgcgctcgaagggcgtgacctg
cgggtgacggctcaaaccgggagtggcaagactgccgctttcgtcctgccgatcctcaac
cgtctgatcggcccggccaagatccgtgtcagcatcaagaccctgatcctgctgccaacc
cgcgagttggcccagcagaccttgaaggaagtggaacgcttctcgcagttcaccttcatc
aagtccggcctgatcaccggtggcgaggatttcaaggtgcaggccgcgatgctgcgcaag
gtgccggatatcctgatcggcacccccgggcggatgatcgagcagttgaacgccggcaac
ctggacctcaaggaagtcgaagtgctggtactggacgaagccgaccgcatgctcgacatg
ggctttgccgatgacgtgcagcgcctggtggacgaatgtgtcaaccgccagcagaccatg
ttgttctccgccaccaccggtggctcgaccctgcgcgagatggtcgccaaggtcctgaac
aaccctgagcacctgcaggtcaataacgtcagcgacctgaactcgactacccgtcagcag
atcatcaccgctgaccacaatgtgcacaaagagcagattctcaactggctgctggccaac
gagacctatcagaaggccatcgtgttcaccaacacccgggccatggccgaccgtatctac
gggcgcctggtggctcaggagtacaaggcgtttgtcttgcacggtgaaaaggaccagaag
gaccgcaagctggccatcgaccgcctcaagcagggcggcgtgaagatcctggtcgccacc
gacgttgccgcccgcggcctcgacgtggaaggcctggacatggtgatcaacttcgatatg
ccgcgcagcggtgacgagtatgtgcaccgtatcggccgtaccgggcgtgccggcaacgat
ggcctggccatctcgctgatctgccatggcgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagtcgttcgagcgccgtaccatcaaggaagtcaaaggcacctacagcggg
ccgaagaaggtcaaggcttcgggcaaggccgtgggcgtgaagaagaaaaaggtcgacgcc
aagggcgacaagaagaaaaccggcgccaagtcgccgaccaagcgcaagatcgccaaccgt
ccgaagaccgacaacctgtcgttggtcagcaaggacggcatggcccccctcaagcgccgc
aagccagaagcaccggctggcgaatag
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