Pseudomonas fluorescens Pf0-1: Pfl01_0275
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Entry
Pfl01_0275 CDS
T00283
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pfl01_0275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_0275
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_0275
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pfl01_0275
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pfl01_0275
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pfl01_0275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ABA72019
UniProt:
Q3KJN7
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All DBs
Position
320449..322377
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AA seq
642 aa
AA seq
DB search
MHNTLEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVS
PLLALMQDQLEFLRRHGISAGSIDSTQSREDANDVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIRQTLLLTATATPKVIADM
QAKFSIAEDDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSARAGQPSIVYVTLQKTAE
QIAEHLERNGIQAEAYHAGLPHEQRDAIQKRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRHVLDELQ
AAAPEGQWEFLLGPLADQSNIRALPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPDTL
LERFEGERRDFVAAIIQTSSRARTWATVNFEAMYEQYSAERNRVVKALDYFQEKGWVELE
SKQMTEVYNVLRGDFDSQVLSAELHEYFTRHEQTEVARIHAMLELFATERCLGYRLAEYF
GDHNAPQQCGHCSVCHGHVARLPAPPELPALVDKNFTELCGEFIHRHQQYAGSAPSAERL
TRFLCGISVPLFTKLKARAISGFAALEEYPYAEVRAWAQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggttttcggttatccacagtttcgacccggccaggaagcg
gcgatcagcgctgtgctcgccgggcgctcggcagccgcgatatttcccaccggctccggc
aaatccctttgttaccaggtcccggcactcttgctgccgcacctgacgctggtggtctca
ccgttgctggcgctgatgcaggatcagctcgagttcttgcgccggcacgggatatccgca
ggcagcatcgactcgacgcagagccgcgaagacgccaacgatgtgatggcccgcgcccgt
tcgggcgaattgaagatcctgatgatttccgtggagcgtttgaagaacgagcgctttcgc
aactttttgcagcaggtgccgatctcgctgctggtggtggatgaggcgcactgcatctcc
gaatggggccacaactttcgccctgactacctcaagctgccggactaccagcgtcagttc
aacatccggcaaaccttgctgctgaccgccacggcaacgccgaaggtcatcgccgacatg
caggcgaaattctccattgctgaagacgatgtggtgaccaccggtttctatcggcccaac
ctcaatctgctggtcgagccggtgcgtgggcaggacaagcgccgacggctggtggagtgg
atgagcgcgcgcgcgggccagccgagcatcgtttacgtcaccctgcagaaaaccgccgag
cagattgccgaacatctggagcgcaatggcattcaggccgaggcttaccacgccggtttg
ccccatgaacagcgggacgcgatccagaagcgcttcatgggcgggcagtccaattgcatc
gtcgccaccatcgccttcggcatgggcatcgacaagagcgacatccgcaacgtggtgcat
ttcgatctgcccaaatccatcgaaaactacagccaggaaatcggtcgcgccggacgtgac
gggcagccctcagattgtctggtactggccaatcgcgacagtctcaacgtgctggaaaac
ttcgtgtatggcgacacgccggagcaagatggcattcgtcacgtgctcgacgagttgcag
gccgccgcgcccgaaggccaatgggaatttctgctcggaccgctggcggatcagagcaac
attcgcgcgctgcctttgaagacgttactggtgcagctggagctgcgagggctgattgcc
ccgcgctacgcgtactacgccgaatatcgcttcaaatacctgctggagcccgacacgttg
cttgagcgtttcgaaggtgaacgaagggatttcgtcgccgcgatcatccagacctcaagc
cgcgcacgcacctgggccacggtgaatttcgaggcgatgtacgagcagtattccgccgag
cgcaaccgggtggtgaaggccctggattatttccaggagaagggctgggtcgagcttgag
agcaagcagatgaccgaggtctacaacgtcctgcgtggcgatttcgacagccaggtcttg
agcgctgaactgcatgagtacttcacccgccatgagcaaaccgaagtggcgcggattcac
gccatgctcgagctgttcgccaccgagcgatgcctcggttatcggctggccgaatatttc
ggtgatcacaatgcgccgcagcaatgcgggcattgctcggtgtgccacgggcacgtcgcc
cggttgccggcaccgccggaattgccggcgcttgtggataaaaactttacggagttgtgt
ggggaatttatccacaggcatcagcagtacgctggcagtgctccgtcggccgagcggctg
acccggttcctctgcggaatcagtgtgccgctgtttaccaaactcaaggcccgggccatt
tccgggtttgcggcactggaggagtatccctacgccgaggttcgggcctgggctcaggcg
catctttga
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