Pseudomonas fluorescens Pf0-1: Pfl01_0688
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Entry
Pfl01_0688 CDS
T00283
Name
(GenBank) exonuclease V subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pfl01_0688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_0688
Enzymes [BR:
pfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pfl01_0688
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pfl01_0688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABA72432
UniProt:
Q3KIH4
LinkDB
All DBs
Position
808400..811852
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDTQSLNAAFMVVQSNSLDELRSLVISIMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEADDSGGCGIAAAIDVQLPGSFMWQLYRMVLGREEIPATSLLDKAPLTWRLMRLLPQV
ITRPHFEPLQRFLIHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGHHQLRNVRGE
AKPLPPTSCWQAELWRALLDDVGEQGMAQSRAGVHQRFMERINSLERAPTGLPQRVIVFG
ISSLPAQVLEALAGLSRFSQVLLCVHNPCRYHWADIVADKDLLRHQYKRQARKNGMPVVL
DSEMLHQHAHPLLAAWGKQGRDYINLLDSYDDPDSYRAAFRNGRIDLFSENQPKNMLNQL
QDDILELRPLNETRALWPAVDLTQDDSIRFHIAHSAQREVEILHDQLLARFSANPQLRPR
DVIVMVPDIDSYAPHIRAVFGQLDRHDPRFIPFTMADQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVQERDLPTLHRWIEGAGVRWGIDAGQRAELGLPDELEQNS
WRFGLRRMLLGYAVGSSGACGDIEPYDEIGGLDAALIGPLVALLDALELSHQQLMKPAQP
QEWGHRLQALMQLFFKPEDEHDDYLLAQLEELRETWMETCEAVGLLDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARHQLYISWVGRSIRDNSERPASVLIGQLRDHLANGWRSSD
NKEDLLIAMTQEHPLQPFSSRYFHEEDKLFSYASEWQVLHQPHEQNDTATMLVPHIQEEP
LSLELLQDFLRNPVRHFFTQRLKVYFEAAQIPQADEEPFVLDALQRYMLSDSLLGAALRH
PDNVDQALESQARRLQNSGLLPIAGFGECLQRELIEPLPDLLQRYQQLLALWPTPLSNAL
PINFEWQELRLEGWLGGLHRRADGGVLSVTTIPNSIGSIKSRKWHRLTKPWVSHLVACAS
GLSLTTALVASDDTLLLEPLEQTRAGRVLEDLLLAWQTGMRQPLPVAVKTAFAWLGQTDP
VKAEAAARKTYEGDGQTSEGERRESPALARQFPDYDALQADETFSGWCDALYRPLLEAPW
HSWTHEEAGA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacacccagtccctcaacgctgcattcatggtcgttcagagcaacagcctggat
gaactgcgcagccttgtgatcagcatcatgcggcgctatccactggcacccctggagaac
gaaattgcgctcgtgcagagcaacggcatcgctcaatggctcaagctggcactggctgaa
gaccctgaagcggacgactctggcggctgtggtatcgccgccgctattgatgtgcaactg
ccgggcagtttcatgtggcagctttaccggatggttctggggcgagaggagattccggca
acgtcgctgctcgataaggcaccattgacctggcgcctgatgcgcctgttgccacaggtc
atcacccgaccccatttcgaaccgctacaacgcttcctcatccatgacaccgatctgcgc
aagcgttaccagttgtccgaacgtctggcagacctctttgaccaatatcaggtttaccgc
gctgattggcttgaggattgggcagaggggcatcatcaactacgcaatgtgaggggtgaa
gcgaagccgcttcctccgaccagttgctggcaggcagagttgtggcgtgccctgctggac
gatgtgggcgagcaaggcatggctcaaagtcgggcgggcgtgcaccagcggttcatggag
cgcatcaacagtcttgaacgcgcaccgaccggacttccccagcgagtgatcgttttcgga
atttcctcgttgccagcccaggtactggaggcattggccgggctttcccgtttcagccag
gttttgttgtgcgtccataacccctgtcgttatcactgggccgatatcgttgccgacaag
gatctcttgcgccatcagtacaagcggcaagcccgaaaaaacggtatgcccgtagtgctg
gattcggaaatgctccaccagcatgctcacccgctcctcgctgcgtggggcaagcaaggt
cgcgattacatcaaccttctcgacagctatgacgaccccgatagctatcgcgcagcattt
cgcaatggacgtatcgatctgttcagcgaaaaccagccgaagaacatgctcaatcagtta
caggacgacattctggaactgcggccgctcaacgagactcgagcactctggccggcagtc
gatctgactcaagacgattcgatccgctttcatattgcccatagcgcccagcgcgaagtg
gagattctccacgaccagttgctggcacgtttcagtgccaaccctcaattacgcccgcgc
gacgtgatcgtgatggtgcctgacatcgatagttatgcgccgcatattcgcgccgtattt
gggcagctggatcgtcatgatccacgcttcattcccttcacgatggccgatcaggggcag
cgcggacgggatccattactgatcgctgtcgagcatctgctcaagctgccggatagtcgt
ttccccgtcagtgaaatcctcgacttgcttgatgttccggcgttacgcgccagatttggt
gtgcaggaacgagacttgccgaccctgcatcgctggatcgaaggtgccggcgtgcgttgg
gggattgatgccgggcaacgggccgaactgggattgcccgacgaactggagcaaaacagt
tggcgcttcggcctgcgtcggatgctgctcggctatgccgtcggcagttccggagcctgt
ggggatatcgaaccctacgatgaaatcggcggtctcgatgccgcgttgattgggccattg
gtagcgttgctggatgcactggagctttcgcatcagcaactgatgaaacccgcccaacca
caggaatgggggcatcggcttcaggcgttgatgcaactgtttttcaagcccgaagatgag
catgacgactacctgctggctcaactcgaggagttgcgcgaaacctggatggaaacctgt
gaggccgtcggtctgttggacgagctgccactgaccgtcgtccgtgaggcttggctggcg
gggctggatcaggggcgtctgtcgcagcgcttcctggccggagccgttaacttttgcacg
ctgatgccgatgcgcgcgatcccgttcaagctggtttgcctgttgggcatgaacgatggc
gattatccgcgcgctcaaccgccgctggacttcgatctcatgggcagcgactaccggccg
ggagatcgctcccgtcgggaggatgatcgctatcttctgctcgaagcgctcttgtccgcc
cgtcatcagctctacatcagttgggtcggtcgcagcattcgcgacaacagcgagcggcca
gcctctgtgttgatcggccagttgcgcgatcatctcgccaatggatggcgatcgagcgac
aacaaagaggatctcctgattgccatgactcaggagcatccgttgcagccattcagttcg
cgctacttccatgaggaagacaaactgttcagctatgccagcgaatggcaggtgctgcat
caacctcacgaacagaacgacaccgcaacgatgcttgtaccccatatccaggaggagccg
ttgagtctggaactgctacaggacttcctgcgcaatccggtccgacactttttcactcag
cgactcaaggtttacttcgaagcggcgcagatacctcaggctgacgaggaaccctttgta
ctggatgcgttgcagcgatatatgctcagtgacagcttgctcggagcagccttgagacac
ccggataatgttgatcaggcactcgagtctcaagcccgacgcctgcagaacagcggcctg
ttgcccattgccggattcggtgaatgccttcagcgagagctgatcgagcctttgccagac
ttgttgcagcgatatcaacagttgctggcgttatggccgacacccctgtccaacgcccta
ccgatcaattttgaatggcaggagctgcgccttgaagggtggctgggcggcttgcaccgg
cgcgccgatggcggcgtactgtcggtcacgacgatcccgaacagcataggctcgatcaag
agccgcaaatggcatcgcctgaccaagccctgggtcagccaccttgtcgcgtgtgccagt
gggctctccctgacgaccgcactggtggccagtgatgacacgctccttcttgaacctctg
gaacagactcgagcgggacgggttcttgaggatctgctgctcgcctggcagacgggtatg
cgtcagccacttccggtcgcggtaaaaacggcttttgcatggctggggcagaccgatcca
gtcaaggctgaagcggctgcccgcaaaacctatgagggtgatggtcagaccagcgaaggc
gaacgtcgggaaagcccggctctggcccgacagttccccgactacgatgcactgcaggcg
gatgaaaccttctccggttggtgtgatgcgctttatcgcccgttgctcgaggcaccttgg
cactcatggacccacgaggaggcaggcgcatga
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integrated database retrieval system
