Pseudomonas fluorescens Pf0-1: Pfl01_0857
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Entry
Pfl01_0857 CDS
T00283
Symbol
rpoN
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo02020
Two-component system
pfo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pfl01_0857 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pfl01_0857 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfo03021
]
Pfl01_0857 (rpoN)
Transcription machinery [BR:
pfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pfl01_0857 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
RRP4_S1
DUF4741
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
ABA72600
UniProt:
Q3KI06
LinkDB
All DBs
Position
complement(1005472..1006965)
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD
PMADNAEQKPNTEIQEPSYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLP
SSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LDAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWLAEAKRLV
TDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNAQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggatctgcaacaggaaatccaggaggct
ctggaatccaatccgatgctcgaacgccaggaagacggcgacgacttcgacaactccgat
cccatggccgacaacgccgaacagaagcccaacaccgagatccaggaaccttcctatcag
gagaccgcgccgacagtcgacaacctcgaagacggcgaatggaacgagcgcatccccaac
gaactgcccgtcgacaccgcttgggaagacgtctatcagaccagcgccagcagcctgccg
agcagcgatgatgacgagtgggacttcaccacccgcacctccgccggcgagagcctgcaa
agtcacctgctgtggcagttgaaccttgccccgatgtccgacaccgatcgcctgatcgct
gtcaccctgatcgattgcatcaacaatcagggttacctcgacgaaaccctcgaagaaatt
ctcgacgccttcgatccggaactcgacatcgagctggacgaaatcgaagccgtcctgcac
cgcatccagcagttcgaaccggccggcatcggcgcacgcaacctgggcgaatgcctgttg
ctgcaattgcgccagctgtcggccaagaccccttggctggcagaggccaagcgtctggtc
accgattacatcgacctgctcggcagccgcgactacagccagctgatgcgccgcatgaag
ctcaaggaagacgaactgcgccaagtcatcgaactggtgcagagcctcaacccgcgcccc
ggctctcagatcgaatccaccgaagccgaatacgtggtacctgacgtcatcgtacgcaag
gacaacgagcgctggctggtcgagctgaaccaggaatcggtgccgcgcctgcgggtcaac
gcccagtacgccggtttcgtgcgccgcgccgacaccagcgccgacaacaccttcatgcgc
aatcagttgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaaccctg
atgaaagtagcgacccagatcgtcgagcaccagcgcggctttctggaatacggcgacgaa
gcgatgaagccgctggtcctgcatgacatcgctgaagcggtgggcatgcacgagtcgacg
atttcccgcgtgaccacgcaaaagttcatgcataccccgcgaggcatatatgaactgaaa
tactttttctccagccatgtgagcacttcagaaggcggtgaatgctcgtccacggcgatc
cgcgcgatcatcaagaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtggctcgccgcaccgtcgccaag
taccgcgaatccctcgggatcgcgccttcgagcgaacgcaagcggttgatgtaa
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