Pseudomonas fluorescens Pf0-1: Pfl01_0971
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Entry
Pfl01_0971 CDS
T00283
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pfl01_0971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_0971
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pfl01_0971
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pfl01_0971
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABA72714
UniProt:
Q3KHP2
LinkDB
All DBs
Position
complement(1130745..1132223)
Genome browser
AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVPTAPSHAAGHRNDASKADRQTPATPPKQEPKPAPAAAP
ATEPARSETPKPARPRREPKPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIHDL
GFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRA
LIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLL
DFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVM
NLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFNLVNDNGWERVIVFANRK
DEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS
HVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPT
HLLRAVERKRPQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaaaatgttcggtaaaagcgaggctgagcagctcgcg
ccagtccccactgcgccgtcgcacgccgccggtcatcgcaacgatgccagcaaggccgac
cgccagacgcccgccacgcccccaaagcaagaaccgaaacccgctccagctgccgcgccc
gccaccgagccggcccgcagcgaaacaccgaaaccggccagaccacgtcgcgaacccaag
cccaaggcgccggtgattccctggaaactcgaagacttcgtcgtcgagccccaggaaggc
aagacccgcttccacgatttcaaactcgccccggaactgatgcacgccatccacgacctg
ggtttcccgtattgcacaccgatccaggcccaggtgctgggttataccctcgccggcaaa
gacgccatcggccgcgcacagaccggcaccggcaagaccgccgcgttcctgatctcgatc
atcacccagctgctgcagaccccgccgccgaaagagcgctacatgggcgaaccacgggcg
ctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaaggacgccgccgacctg
accaagtacaccggtctcaatgtcatgaccttcgtcggcgggatggacttcgacaagcag
ctcaagcacctcgaagcgcgccattgcgacatcctcgtcgcgaccccgggccgcctgctt
gacttcaaccagcgcggtgacgtgcacctggacatggtcgaagtgatggtgctggacgaa
gccgaccgcatgctcgacatgggcttcatcccgcaggtccggcagatcattcgccagacc
ccgccgaaaagcgaacgccagactctgctgttctccgcgaccttcaccgatgacgtgatg
aacctcgccaagcagtggaccaccgatcctgcgatcgtcgaaatcgaagtcaccaacgtg
gccaacgaaaacgtcgagcagcacatctacgcggtggccggtgccgacaaatacaaactg
ctgttcaacctggtcaacgacaacggctgggagcgggtcatcgtgttcgccaaccgcaag
gacgaagtgcgccgcatcgaggaacgcctggtgcgtgacggcatcaacgccgcgcaactg
tccggcgacgtgccgcagcacaagcggatcaagacgctggaaggcttccgcgaaggcaag
atccgggtgctggtcgccaccgacgtggccggtcgcggtatccacatcgacggcatcagc
cacgtgatcaacttcactctgccggaagtcccggacgactacgtgcaccgcatcggccgt
accggtcgcgctggcgccgacggtgtgtcgatcagcttcgccggtgaggacgactcctat
cagttgccgtccatcgaagaaaaactcggtcgcaagatcagctgtgaaacaccgccgacc
catctattgcgggcggttgagcgcaagcgtccacagtaa
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