Pseudomonas fluorescens Pf0-1: Pfl01_1388
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Entry
Pfl01_1388 CDS
T00283
Name
(GenBank) putative ribonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfo03016
]
Pfl01_1388
Enzymes [BR:
pfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pfl01_1388
Transfer RNA biogenesis [BR:
pfo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pfl01_1388
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ABA73131
UniProt:
Q3KGH5
LinkDB
All DBs
Position
1561967..1563100
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGKRAYLIDPL
TINAWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKLSDDKFAWV
LEDGAELVANLRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHSLWPLARTQPDNLSALGKIEDMHPRTVRQDGEFLLDLIKRSGSVGPDQWPPAVPEPL
PIEAAALIKQLRALGQAEAERLGIAPELMLRKKTLEALVKSGFPEGPYQLPDSLRGWRRE
LMGQKLLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcgcgcagttttgcgccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttctat
ccgattgccggcctgttgcaggtcggcgacggcaaacgcgcctacctgatcgacccgctg
accatcaacgcctggcagcccttggccgcgttgctggaaaacccggcggtgctcaaagtc
ctgcacgcctgcagcgaagacctcgaagtcctgctgcgcctgaccggcagcctgccggcg
ccgctgttcgacacccaactggccgctgcctacctgaacctcgggttctcgatgggctat
tcgcgtctggtgcaggaagtgctgggcatcgaactgccgaagggcgaaacccggtccgac
tggttgcagcgtccgttgtccgacacgcaaatcagctatgccgccgaagacgccgtgcat
ctggcggaggttttcgtacaactgcgtccgaaactgtccgacgacaaattcgcctgggtg
ctggaggacggcgccgaactggtcgccaacctgcgccgcgagaccgatccgtacgaggtg
tatcgcgaggccaaactggcgtggaagctgtctcgcgcccaactggctgtgctgcgcgaa
ttgtgcgcctggcgtgagcgcgaggcccgcgcccgcgacctgccgcgcaatcgcatcgtg
cgtgaacactcgctgtggccgctggcccggacccaaccggacaacctcagcgcgctgggc
aagatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgagtttctgcttgatctg
atcaagcgctctggcagtgtggggcctgatcaatggccgccagccgtgccggagccgttg
ccgatcgaagccgccgcgctgatcaaacagctgcgggcgctcggtcaggccgaagccgaa
cgtctgggcatcgcgccggaactgatgctgcgcaagaaaaccctcgaagcgctggtcaaa
agcggcttccccgagggcccttaccaattgcctgattcgctgcgtggctggcgccgcgaa
ttgatgggccagaagctgctcgacagcctggccaccgccggagaacagccttga
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