Pseudomonas fluorescens Pf0-1: Pfl01_1420
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Entry
Pfl01_1420 CDS
T00283
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_1420
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pfl01_1420
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pfl01_1420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
AAA_30
SLFN-g3_helicase
Nup88
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ABA73163
UniProt:
Q3KGE3
LinkDB
All DBs
Position
1592406..1596317
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQASCDQVLARK
ASLPVIRYDDSLPIAAKRDEIKKALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDLQLSLNKEPADYPKLHKAVMVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWVMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLTANKQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTAQHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTEMGLLYRELGRVDALVEDILLASLDSCILDGEDPLPRDGAGLAAL
AERKRGSWTEHAERVARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMLWFKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWTQYQTRAAKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcgacagttgcttgagctgcgcaagaaacccgacgaggcc
aagctggcccagtgggtggcgcggatgcaggcgtcctgcgatcaggtgctggcacgcaag
gccagcctgccggtgatccgttacgacgacagcctgccgattgcggccaagcgtgacgaa
atcaagaaggccctggaaaagcaccaggtgctgatcatcgcgggtgaaaccggctcgggt
aaaaccacccagttgccgaaaatctgtctggagatcggtcgcggccagcatggtctgatc
ggccacacccagcctcggcgaattgccgcgcgcagcgtggccagtcgggttgccgaagaa
ctcggcacgccgctgggtgcactggtcggctatcaggttcgattcgaggatcagagcgat
tccaatacgctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac
cggtacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttcctgctcggttacctgaaaaccctgctgccgcgtcgtccggacctgaaagtc
atcatcacgtcggcgaccatcgatctggagcgtttctccaagcatttcgatgacgcgccg
attgtcgaggtttccggccgtaccttcccggtggaaacctggtatcgcccgctgacgctt
gagcaggacgaagagggcaaccgtgtcgaagacgacctgaccgtggatcaggcgatcctc
gccaccctcgacgaaatcgccgcctatgagcgcagcgaacggcgcagtcctggtgacgtg
ctggtgttcctgccgggcgagcgtgagatccgcgacgccgccgacatgctgcgcaaggcc
cagctcaaacacaccgaaatcctgccgttgtacgcgcgcctgtcgccggctgaacagcag
cggattttccagtcgcatccgggccgtcgcgtggtgctggcaaccaacgtcgccgaaacc
tcgctgaccgtgccgggcatccgttacgtgatcgacagcggcaccgcgcgcatcagtcgc
tacagctaccgcgccaaggtccagcggttgccgatcgaagcgatttcccaggccagcgcc
aaccagcgtaaaggtcgctgcggtcgggtcgagccgggtatctgcgtgcgcttgtacagc
gaggaggatttcctcggtcgcccggaatttaccgatccggaaatcctgcgcaccaacctc
gcggcggtgattctgcagatgctccatctgcgccttggcgagatcactgatttcccgttt
atcgagccgccggacggcaaggcgatcagcgacggtttcaacctgctgcaagaactctcg
gcagtggatcgcaacagtcagctgaccccgctcggccgccagttggcgcgcctgccggtg
gatccgcgcatgggccgcatgctgctggaagcggcgaagctcggcagcctgcaggaagtg
ctgatcgtcgccagcgccatgtcgattcaggacccgcgcgagcgtccgccggagcgtcag
caagccgctgaccaggcccacgcgcagtggaaggacgccgattcggacttcgctgcgctg
gtcaatctgtggcgtggcttcgaagaacagcgccaagcgttgaccgccagtccgctgcgc
aactggtgccggaagaatttcctcaattatctgcgcctgcgcgagtggcgcgattcccat
cgccagttgagtctgatctgccgcgacttgcagctgagcctcaataaagagccggcggat
tatccgaagctgcacaaagcggtgatggtcggcttgctcagtcagatcggccagaaaacc
gaggacggcgattaccttggcgcccgtcagcggcggttctggattcacccgtcttcgggc
atcggcaagaagcgcccgcagtgggtgatgaccgccgaactggtggaaaccaccaagctt
tacgcgcggatggtggcgaagatcgacgccgactggatcgagccgctggccgggcacttg
atcaagaagaaccacttcgaaccgcactgggagaagaagcgcggccaggtcgtggcgttc
gagcagatcaccctgttcggtctgatcgtggtcggtcgccgaccggtgcactacggcccg
gtggatcctgtggtttcgcgggagctgttcatccgcgaaggtctggtgcggggcgagatt
cagtcccgggccaagtgcctgaccgccaacaagcaattgctcgaacagctcgacgaactg
gaagccaaggcccgtcgccgggacattctggccgacgaagaaacgctctacgcgttctac
gacgcgcgactgccggcggagattcaccagacggcgacgttcgatagttggtatagggtc
aacagccagaaagatccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgaa
gccagcgaagtcaccgcgcagcattacccggacacgctgcacatcggcgatctggaactg
gccctgagttatcacttcgaaccgaatcacccgcgcgacggtgtgaccctgcgagtgccg
gcgccgctgttgccgatgctgccgccggagcgcctggagtggctggtgccggggctgatc
gaggccaagtgcattgcgctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcatcaaggccgcgctgcaacgcatgacgtttgccgaaggttcgttg
ccgcaagcgctgggccgcgaactgctgcgcatgaccggcgcgcgggtcagcgatgaagcc
tgggccgaagcggcgcagcaggttgaaagccacctgcggatgaacctggaaatcgtcgac
ggccagggcaagttcctcggcgaaggccgggatctggccgagctgaccgcacgtttcgcc
gaagccagccaggccgcgttggccgtgccgcaaagtgcgaagagccagcaaccggtggag
gccaaggtcttcgcgccggtggcggaaaagactcagcagaagatcgccgggctgtcgatg
acggtctatccggcgctggtggaagagggcggcacggtcaaggaaggtcgtttctcgaca
ccggccgaggccgaatttcagcaccgccgcgccttgcaacgcctgctgatgcagcaactg
gccgaaccggccaagttcctgcgcggcaagttgccgggcctgaccgaaatgggcctgctg
taccgcgaactgggccgcgtcgatgcgttggtggaagacattctgctggccagcctcgac
agctgcattctcgacggcgaagacccgttgccgcgtgacggcgcagggctggcggcactg
gccgagcgcaagcgcggcagctggaccgagcacgccgagcgcgtggcacgcctgacgctg
gaaatcctcaagctctggcacggtctgcaaaaacgcttcaagggcaagatcgatctggct
caggccgtggcgctcaacgacatcaagcagcagctcagccatctggtgtatccgggcttc
gtcagggaaacgccgatgctctggttcaaggagttaccgcgctacctgaaagcggtcgag
cagcgtttcgagaagctgggcgcgcaggtgcagaaggatcgggtctggagcggcgaactt
gccggcctttggacgcaataccagacccgcgccgccaaacatgctcaggaaggcaaacgc
gatccgcagctcgagctgtatcgctggtggctggaggagtatcgggtttcgctgttcgcc
cagcagttgggcacgaaagtgccgatctccgacaagcgcctgaacaaacaatggacgcag
gtcgaggcatga
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