Pseudomonas fluorescens Pf0-1: Pfl01_1468
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Entry
Pfl01_1468 CDS
T00283
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pfl01_1468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_1468
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_1468
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pfl01_1468
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pfl01_1468
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pfl01_1468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
HTH_23
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ABA73211
UniProt:
Q3KG95
LinkDB
All DBs
Position
1647794..1649923
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLANRIKRGEVKMLYLAPERLVQ
PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VEEVAAFLTEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQALLAYFDEDMPEPCGHCDNCTDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVYGVGKALSESEWRSLFRQLVARGLADVDHE
GYGGLRLSDTCRPLLKGEVSLELRRDLKPQVSAKSGSKSPASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSQPTSLADMARVSGVGARKLERYGEAFLEVLGGEA
EAPKVVADVRHELITLARAGMTPLQISGQLQCSEKNVYTMLAEAIGKQQLSLEQALDLPE
DLMGEVQDAFLDGEGELPSVAEVAELFAGRVPEGVLYCVRAALQSEFEM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgcaatcattgagcgcgtggccagtggcggtgatgcccttgtcctgatgccg
accggcggcggcaagtccctgtgcttccaggtgccggcgctgctgcgcgatggcctggcg
gtggtggtatcgccgttgatcgcgctgatggacgatcaggtcgccaccctcgaagagctg
ggtgtggccgccgccgcgttgaactccaccctgagcgccgaacaacagcgcgacctcgcc
aaccggatcaagcgcggcgaagtgaagatgctgtatctggcgccggagcggctggttcag
ccgcgcatgctgtcgttcctgcaaggcttgaacattgcgctgttcgccatcgacgaagcg
cactgcgtgtcgcaatggggccatgacttccgcccggaatacctgcaactggggcagttg
gcggaaatgttccccgacgtgccgcgcatcgccctgaccgccaccgccgacaaacgcacc
cgcgaagagatcgtcactcgcctgcatttgcaaaacgccgagcgtttcctgtcgagcttc
gaccggccgaacatcttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctcgccgaacggcgcagcgacgccggcatcgtctactgcctgtcgcgcaagaag
gtggaagaggtggccgcgtttctcaccgaacagggcttcccggcgctgccttaccacgcc
ggtctgcccaacgatctgcgcgcctatcaccagaagcgcttcctcaacgaggaagggctg
atcatggtcgccacggtggcgttcggcatgggcatcgacaaacccaatgtgcgcttcgtc
gctcacctcgatctgccgaaatcccttgaggcgtattaccaggaaaccgggcgcggcggc
cgtgacggcctaccggcggacgcgtggatggcctacggtctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgagggcgacgagcgtcacaagcgtctggagcagcacaaa
ctcgacgccatgctttcgctctgcgaagaaacccgctgccgccgtcaggcgctgctggcg
tacttcgacgaggacatgcccgagccgtgcggccactgcgacaactgcaccgacggcgtg
cagacctgggacgccaccgagcctgcgcgtcaggcgctgtcggcgatctatcgcaccggc
cagcgttatggcgtcggccatctggtggacgtgctgctgggcaaggacaacgaaaaggtc
cgcagcttcggccatcagcacctgtcggtgtacggcgtcggcaaggcgttgagcgagagc
gaatggcgctcgctgttccgtcagctggttgcccgcggtctggccgatgtcgatcacgaa
ggttatggcgggctgcgcctgagcgacacctgccggccgctgctcaagggggaagtgagc
ctggagctgcgccgcgacctcaagccgcaagtcagcgccaagagcggcagcaagagcccg
gccagccaactcgtgcgcggcgaagagcgcgaacagtgggaagcgttgcgtgccctgcgg
cgcaaactggcggaagaacatggcgtgccgccgtatgtcatcttccccgactcgaccctg
ctggaaatgctccgcagccagccgacctcgctggcggacatggcccgggtcagcggcgtc
ggtgcgcgcaagctggagcggtacggcgaggcctttctcgaagtgctcggcggcgaggcc
gaggcgccgaaagtggtggccgacgtgcgccacgaactgatcaccctggcccgtgccggc
atgacgccgttgcagatctccggtcagctgcaatgctcggaaaagaacgtctacaccatg
ctcgccgaagccatcggcaagcagcagctgtcgctggaacaggcgctggatctgccggaa
gacctgatgggcgaagtccaggatgcgttcctcgacggcgaaggcgagttgccgtcggtc
gccgaagtggccgagctgtttgccggtcgtgtaccggaaggcgtgctttactgcgtgcgg
gctgcgctgcaatccgagtttgaaatgtaa
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