Pseudomonas fluorescens Pf0-1: Pfl01_3217
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Entry
Pfl01_3217 CDS
T00283
Symbol
sbcC
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfo
Pseudomonas fluorescens Pf0-1
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_3217 (sbcC)
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pfl01_3217 (sbcC)
Archaeal homologous recombinant proteins
Pfl01_3217 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
MMR_HSR1
AAA_15
RsgA_GTPase
nSTAND3
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABA74955
UniProt:
Q3KB99
LinkDB
All DBs
Position
3696858..3700499
Genome browser
AA seq
1213 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNTGRDAKVPDADGEIATGDPRTLLRRGTGEGFAEVDFVGVDGRRYRARWEANRAREKA
GGKLQASRQSLRDIDQDQLLASQKGEYKTQLEAALGLNFEQFTRAVLLAQSEFSAFLKAD
DNDRSELLEKLTDTALYTRLGRRAFDKTKEAREAHKQLQDQATGVTPLAPEARAELDERF
NVAQQQLKLQQAQLKQIEQQHDWLKELLRLQDSQQAAAEQLRSAEHERESLAGERLKLTR
LEQLAPQRHQFARKTELDTQLTPLAEQISAHTRQQSELAERQTRLEQDLAAAQIALTQAQ
TQLSESAPLLRQAFEEQSTLARLAKDVASGAEAKHAAEQACTQGQSTIQSLLDQQKQVAE
RLQRIAADLEQSAHLAPLSEAWNAYRDRLQQLMLIGNRLNKGQGELASLEENAARASEAL
ATQKQQLEVLFKEAGAEPDAVAEQIGILGTLLQDNRKQLRAIEDLTRLWASQQDLDKRSA
ELQQRQLDAQQERERLTQDGVKTKSELTVAEQTLNVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRHDESEQASAQQAVDQLKEKLTELRASVGGVIAQ
QKELLQQQEQLAAQQQSLTPSIEAHPLAASLLDQDSDKRAAWLTRQNEQLNQSITQDEQR
QTALLTLQQDAARLTQQLRQAETAHQQASQHLSNQQRELSADRQRLDEELAAFATLLPSD
TLEALRAEPASTFMQLDRQIAERLAQVDQQKEELAEQQQRQQTLEKEQDRQQGRVQQLQN
AEQQLNALTGQQQASQEKLAHLLGDHSCAEHWQQQLEQAVEQARNAESTTTQALQDARTQ
RVQIAAELKAQQERLQALETEDRDLAGKIADWRARHPELDDGGLEDLLRIDDAQVDELRQ
RLQHNEKAVEQAKVLLQERDQRLRDHQAQHNGNLDAEQLASALADLQNQCTASEQQCAEL
RAEQAEDQRRQNANQALAQQIADAYAEYQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANVQLRQLVKRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
QRQGNGLSTLEVK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctcgccattcggttgaagaacctcgcctcgctggccggcccgttcgagatc
gactttaccgccgaaccgctggccagcgccggcctgttcgcgatcaccggcccgaccggc
gccggcaaaagtactttgctcgatgcgctgtgcctggcgctgttcggcgccgtgccgcgc
ctgaacaacaccgggcgtgacgccaaggtgccggacgccgacggcgaaatcgccaccggc
gacccgcgcaccttgctgcgtcgcggcaccggtgaaggttttgccgaagtggattttgtc
ggcgtcgatggccgccgctatcgtgcgcgctgggaagccaatcgcgcccgtgaaaaggcc
ggcggcaagttgcaggccagccgtcagagcctgcgcgacatcgatcaggatcaactgctc
gccagtcagaaaggcgagtacaagactcagctcgaagctgcgctgggcctgaacttcgaa
cagttcacccgcgccgtgctgctggcccagagcgagttcagtgccttcctcaaggccgac
gacaacgaccgcagcgaactgctggaaaagctcaccgacaccgcgctctacacccgcctc
ggccgccgcgcgttcgacaagaccaaagaggcccgcgaagcccacaagcagttgcaggat
caggccaccggcgtgaccccgctggcccctgaagcccgcgccgaactcgacgaacgcttc
aatgtcgcccagcagcaactgaagttgcagcaagcgcaactcaagcagatcgagcaacag
cacgactggctcaaggaactgctgcggctgcaagactcgcaacaagccgccgccgagcaa
ctgcgcagcgccgagcatgagcgagagtcgctggccggtgagcgtttgaagctcacccgc
ctggaacaactcgcgccgcaacggcaccagttcgcccgcaaaaccgaactggatacacag
ctgacgccactggcggaacagatcagcgcgcacacccggcaacaaagcgaactggctgag
cgccagacgcgactggaacaggatctcgccgccgcgcagatcgccctgacccaggcgcaa
acgcagttgagcgaaagcgcgccactattgcgccaggctttcgaggagcaaagcaccctc
gcccgcctcgccaaggacgttgcgtccggcgccgaagcgaagcacgccgcagagcaggcc
tgcacccagggccaaagcacgatccagtccctgctcgatcagcaaaaacaggtcgccgaa
cgcttgcagcgcatcgccgccgatcttgagcaaagcgctcacttggcaccgttgagcgaa
gcgtggaatgcctaccgcgaccgcttgcagcaactgatgctgatcggcaatcggttgaac
aagggccaaggtgaactggcctctctcgaagaaaacgccgctcgcgccagcgaagcgctc
gccacgcagaagcaacagctggaagtgctgttcaaggaggccggcgccgagcctgatgcg
gtcgccgagcagatcggcatcctcggcactctgttgcaggacaaccgcaaacaactgcgc
gccatcgaagacttgacgcgcctgtgggccagtcagcaggacctggacaagcgcagtgcc
gaactgcaacagcgtcagctcgatgcgcaacaggagcgcgagcgcctgactcaggacgga
gtaaaaaccaagtccgagctgaccgtcgccgaacagaccctcaacgtcacccgtgaactg
cttgagcgtcagcgtctggcgcgcagtgccagtgttgaagagttgcgcgcgcagttgcag
gacgaccagccgtgcccggtgtgtggcagcaacgagcatccgtatcaccagccggaagcc
ctgctgcaaagcctcggccgtcacgatgaaagcgagcaggccagcgcgcagcaagccgtc
gatcaactgaaggaaaaactcaccgagctgcgcgccagcgtcggtggcgtgattgcccaa
cagaaagagttgctgcaacagcaggaacaactggctgctcagcaacaatcgctgacgccg
agtatcgaggcgcatccgctggcggcatcgttgctggatcaggacagtgacaagcgcgct
gcgtggctgacccgccagaatgaacaactgaaccagagcatcacccaggacgaacagcgc
cagaccgccctgctcaccctgcaacaggatgcggcgcgcctgactcagcagttgcgtcag
gccgaaacggcgcaccagcaagcgtcgcagcacctgagcaatcaacagcgcgaactgagc
gctgaccgccaacgcctggacgaagaactggcggccttcgccacactgctgccgagcgac
acgctcgaagccctgcgcgctgaaccagcctcaacattcatgcagctcgaccggcagatt
gccgagcgtctggcgcaagtcgatcagcagaaggaagagctggccgaacagcaacaacgc
cagcagacgctcgagaaagaacaggaccgccaacagggccgtgtgcagcagctgcaaaac
gctgagcagcagctcaacgcgctgaccgggcaacaacaggccagccaggaaaaactggcg
cacttgttgggcgatcacagctgcgccgagcattggcagcagcaactggaacaggccgtg
gagcaggcgcgcaacgccgaatccacgacgactcaggcgttgcaggacgcacgtacgcag
cgggtgcaaatcgccgccgaactgaaagcgcagcaagagcgtctgcaagcgctggaaacc
gaagatcgtgatctggccggcaagattgccgactggcgtgcgcgccatccggaactggat
gacggtggcctcgaagacctgctgcggatcgatgacgcgcaggtcgacgaactgcgccag
cgcttgcagcacaacgaaaaagccgttgaacaggccaaggtgttgttgcaggaacgcgat
cagcgcctgcgcgatcatcaggcccaacacaacggcaatctggatgccgaacaactcgcc
agcgccctcgccgacctgcaaaaccagtgcacggccagcgaacagcaatgtgccgaactg
cgcgccgagcaggccgaagaccagcggcgccagaacgccaatcaggcgctggcgcagcag
atcgccgatgcctatgccgagtatcagcgctgggcgcggctcaatgcgctgatcggctcg
gccaccggcgataccttccgcaagatcgcccaggcctacaacctcgacctgctggtgcat
cacgccaacgtgcagctgcggcaactggtcaagcgctatcgcctcaaacgcggcggcagc
atgctcggcctgttggtcatggacaccgaaatgggcgacgaactgcgctcggtgcattcg
ctgtccggcggcgaaaccttcctcgtgtcgctggccctcgcactgggcctggcctcgatg
gcatcgagcacgctgaagatcgaatcgctgttcatcgacgaaggcttcggcagtctcgat
ccggaatccctgcaactggccatggacgccctcgacggcttgcaggcacaggggcgcaag
gttgcggtgatttcgcacgtgcaggaaatgcacgagcggattccggtgcagattcaggta
cagcgccagggcaacggtctgagcacactggaggtgaaatga
DBGET
integrated database retrieval system